Results 141 - 160 of 225 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21381 | 3' | -61.5 | NC_004812.1 | + | 82007 | 0.69 | 0.497167 |
Target: 5'- aACC-CGGGGUcGGagaGCacgGCGGGGGGGAc -3' miRNA: 3'- gUGGaGUUCCA-CCg--CG---CGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 135218 | 0.69 | 0.497167 |
Target: 5'- -uCCUCGucgucuguguuGGGgccgGGCGgGCG-GGGGGAa -3' miRNA: 3'- guGGAGU-----------UCCa---CCGCgCGCuCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 137970 | 0.66 | 0.681463 |
Target: 5'- -cCCUCGucGGGgcggGGuCGgGgGGGGGGGGg -3' miRNA: 3'- guGGAGU--UCCa---CC-GCgCgCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 95854 | 0.66 | 0.700911 |
Target: 5'- aACCggacCGAGGcgcgGGUGCGgugggcCGAGGGGGc -3' miRNA: 3'- gUGGa---GUUCCa---CCGCGC------GCUCCCCCu -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 115335 | 0.66 | 0.691209 |
Target: 5'- gCGCCUCGcuGUagcucgGGaGCGCGGGcGGGGAc -3' miRNA: 3'- -GUGGAGUucCA------CCgCGCGCUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 93539 | 0.66 | 0.700911 |
Target: 5'- gGCCggAGGG-GGC-CGUGGGGGcGGAg -3' miRNA: 3'- gUGGagUUCCaCCGcGCGCUCCC-CCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 151917 | 0.66 | 0.681463 |
Target: 5'- cCGCC-CGGGGcucuggGGCGCGCcgGAGGuGGAc -3' miRNA: 3'- -GUGGaGUUCCa-----CCGCGCG--CUCCcCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 137967 | 0.66 | 0.681463 |
Target: 5'- gGCCccucgUCGGGGcGGgGuCGgGGGGGGGGg -3' miRNA: 3'- gUGG-----AGUUCCaCCgC-GCgCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 6687 | 0.7 | 0.460766 |
Target: 5'- gACgaCAGGG-GGCGUGUguguuGGGGGGGAg -3' miRNA: 3'- gUGgaGUUCCaCCGCGCG-----CUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 72300 | 0.7 | 0.463448 |
Target: 5'- gGCCggggCGGGGggacggaucgaucgGGCGCggccgggcgggccGCGGGGGGGAg -3' miRNA: 3'- gUGGa---GUUCCa-------------CCGCG-------------CGCUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 148499 | 0.69 | 0.469737 |
Target: 5'- ----gCGAGG-GGUGCGCGGGGGaGGGg -3' miRNA: 3'- guggaGUUCCaCCGCGCGCUCCC-CCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 104149 | 0.66 | 0.700911 |
Target: 5'- uGCCgguaggCGgcAGGaGGCGaCGCGGGcGGGGGg -3' miRNA: 3'- gUGGa-----GU--UCCaCCGC-GCGCUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 30172 | 0.68 | 0.525294 |
Target: 5'- aACCU--AGGUGccGCGCGCGGcugccuGGGGGGc -3' miRNA: 3'- gUGGAguUCCAC--CGCGCGCU------CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 116202 | 0.68 | 0.5234 |
Target: 5'- cCGCCggaggaaaauGGGgaggGGCGCGCaaauGGGGGGGGg -3' miRNA: 3'- -GUGGagu-------UCCa---CCGCGCG----CUCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 85121 | 0.69 | 0.515848 |
Target: 5'- gACCgcCAAcuaccGG-GGCGCGCGGGcGGGGGc -3' miRNA: 3'- gUGGa-GUU-----CCaCCGCGCGCUC-CCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 78605 | 0.69 | 0.515848 |
Target: 5'- uGCCUCGucGGUGGaaGCgGCGGcGGGGGGc -3' miRNA: 3'- gUGGAGUu-CCACCg-CG-CGCU-CCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 133052 | 0.69 | 0.506471 |
Target: 5'- cCGCC-CAcucGGG-GGCGgGCGcGGGGGGc -3' miRNA: 3'- -GUGGaGU---UCCaCCGCgCGCuCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 122218 | 0.69 | 0.506471 |
Target: 5'- cCGCC-CcGGG-GGCGgGCGcGGGGGGc -3' miRNA: 3'- -GUGGaGuUCCaCCGCgCGCuCCCCCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 71347 | 0.66 | 0.661863 |
Target: 5'- gGCUUCGAcGGgGGCGUGgGuAGGGaGGAa -3' miRNA: 3'- gUGGAGUU-CCaCCGCGCgC-UCCC-CCU- -5' |
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21381 | 3' | -61.5 | NC_004812.1 | + | 122276 | 0.66 | 0.675596 |
Target: 5'- gACCaCGGGG-GGCGCgGCGGcgccggagggccgccGGGGGGa -3' miRNA: 3'- gUGGaGUUCCaCCGCG-CGCU---------------CCCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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