miRNA display CGI


Results 41 - 60 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 3' -61.5 NC_004812.1 + 60533 0.66 0.651042
Target:  5'- -cCCUCGAGGaccgUGuGCGCGCggaucgaGAGGGaGGGc -3'
miRNA:   3'- guGGAGUUCC----AC-CGCGCG-------CUCCC-CCU- -5'
21381 3' -61.5 NC_004812.1 + 154693 0.66 0.646117
Target:  5'- uGCuCUCGagaAGGUGGCGUGCGguGcacgugugguuuauuGGGGGGc -3'
miRNA:   3'- gUG-GAGU---UCCACCGCGCGC--U---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29185 0.66 0.646117
Target:  5'- uGCuCUCGagaAGGUGGCGUGCGguGcacgugugguuuauuGGGGGGc -3'
miRNA:   3'- gUG-GAGU---UCCACCGCGCGC--U---------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 13420 0.66 0.642176
Target:  5'- gGCCggaGGGGUGGC-CGuCGuuucGGGGGAc -3'
miRNA:   3'- gUGGag-UUCCACCGcGC-GCu---CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 36888 0.66 0.642176
Target:  5'- gUACg-CGGGGUGGUagGCGcCGGGGGGcGAg -3'
miRNA:   3'- -GUGgaGUUCCACCG--CGC-GCUCCCC-CU- -5'
21381 3' -61.5 NC_004812.1 + 16755 0.66 0.642176
Target:  5'- gGCUcagUCGGGG-GGCGCgggggccggaggGUGAGGGGGc -3'
miRNA:   3'- gUGG---AGUUCCaCCGCG------------CGCUCCCCCu -5'
21381 3' -61.5 NC_004812.1 + 47514 0.66 0.642176
Target:  5'- gGCgCg-GAGGUGGCcgGCcagGCGGGGGGGGc -3'
miRNA:   3'- gUG-GagUUCCACCG--CG---CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 122414 0.66 0.642176
Target:  5'- -uCCUC-GGGUGGaCGCGCGGuGGGcccGGGc -3'
miRNA:   3'- guGGAGuUCCACC-GCGCGCU-CCC---CCU- -5'
21381 3' -61.5 NC_004812.1 + 103256 0.66 0.642176
Target:  5'- gAUCUCGcGcaGGCGCGCGGGGGcGAc -3'
miRNA:   3'- gUGGAGUuCcaCCGCGCGCUCCCcCU- -5'
21381 3' -61.5 NC_004812.1 + 153315 0.66 0.642176
Target:  5'- -uCCUC-GGGUGGaCGCGCGGuGGGcccGGGc -3'
miRNA:   3'- guGGAGuUCCACC-GCGCGCU-CCC---CCU- -5'
21381 3' -61.5 NC_004812.1 + 84000 0.66 0.64119
Target:  5'- -uCCUUggGG-GGCGuCGCGGcccggcccuccuuGGGGGGc -3'
miRNA:   3'- guGGAGuuCCaCCGC-GCGCU-------------CCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 148225 0.67 0.632317
Target:  5'- nGCCgcuuGGGUGGcCG-GCG-GGGGGAg -3'
miRNA:   3'- gUGGagu-UCCACC-GCgCGCuCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 64547 0.67 0.632317
Target:  5'- gGCCaUCAAGGUGGUGUGCaacucgguguacGGGuucacGGGGGu -3'
miRNA:   3'- gUGG-AGUUCCACCGCGCG------------CUC-----CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 155047 0.67 0.632317
Target:  5'- nACC-CGGGcGgcucGCGCGCGuAGGGGGGa -3'
miRNA:   3'- gUGGaGUUC-Cac--CGCGCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 29539 0.67 0.632317
Target:  5'- nACC-CGGGcGgcucGCGCGCGuAGGGGGGa -3'
miRNA:   3'- gUGGaGUUC-Cac--CGCGCGC-UCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 127002 0.67 0.632317
Target:  5'- -----gAAGGUGGgGUaggGCGGGGGGGGg -3'
miRNA:   3'- guggagUUCCACCgCG---CGCUCCCCCU- -5'
21381 3' -61.5 NC_004812.1 + 130544 0.67 0.622458
Target:  5'- gACCcCGggccGGG-GGCGCGCGAGGGc-- -3'
miRNA:   3'- gUGGaGU----UCCaCCGCGCGCUCCCccu -5'
21381 3' -61.5 NC_004812.1 + 5035 0.67 0.622458
Target:  5'- gACCcCGggccGGG-GGCGCGCGAGGGc-- -3'
miRNA:   3'- gUGGaGU----UCCaCCGCGCGCUCCCccu -5'
21381 3' -61.5 NC_004812.1 + 122242 0.67 0.622458
Target:  5'- --gCUCGGcGGcGGgGCGCGGGcGGGGGg -3'
miRNA:   3'- gugGAGUU-CCaCCgCGCGCUC-CCCCU- -5'
21381 3' -61.5 NC_004812.1 + 153143 0.67 0.622458
Target:  5'- --gCUCGGcGGcGGgGCGCGGGcGGGGGg -3'
miRNA:   3'- gugGAGUU-CCaCCgCGCGCUC-CCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.