miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21381 5' -56.7 NC_004812.1 + 49416 0.66 0.888952
Target:  5'- -cUCUCCCcGCCCGaccgccacgcuccGCUCGCCcggCGc -3'
miRNA:   3'- caAGAGGGaCGGGCa------------CGAGUGGaa-GC- -5'
21381 5' -56.7 NC_004812.1 + 74708 0.66 0.863163
Target:  5'- cGUUCgCCCUGCggGUGCUgGCCUg-- -3'
miRNA:   3'- -CAAGaGGGACGggCACGAgUGGAagc -5'
21381 5' -56.7 NC_004812.1 + 22092 0.67 0.847662
Target:  5'- --gCUCCacaUGCCCG-GCUCcaGCCggcgUCGg -3'
miRNA:   3'- caaGAGGg--ACGGGCaCGAG--UGGa---AGC- -5'
21381 5' -56.7 NC_004812.1 + 137859 0.67 0.831384
Target:  5'- --cCUCgUCUGCCgGgccCUCACCUUCGa -3'
miRNA:   3'- caaGAG-GGACGGgCac-GAGUGGAAGC- -5'
21381 5' -56.7 NC_004812.1 + 40910 0.67 0.822971
Target:  5'- -gUC-CCCaUGCCCuggGCUCGCCU-CGg -3'
miRNA:   3'- caAGaGGG-ACGGGca-CGAGUGGAaGC- -5'
21381 5' -56.7 NC_004812.1 + 110299 0.67 0.814386
Target:  5'- -gUgUgCCUGCCCGUGCcCGCCccguacgUCGu -3'
miRNA:   3'- caAgAgGGACGGGCACGaGUGGa------AGC- -5'
21381 5' -56.7 NC_004812.1 + 103720 0.68 0.79673
Target:  5'- -cUCgagCCCUGCaCCGUcggucaccggcGCuacuUCACCUUCGg -3'
miRNA:   3'- caAGa--GGGACG-GGCA-----------CG----AGUGGAAGC- -5'
21381 5' -56.7 NC_004812.1 + 33557 0.69 0.7405
Target:  5'- -----aCCgGCCCGUGCUCACCa--- -3'
miRNA:   3'- caagagGGaCGGGCACGAGUGGaagc -5'
21381 5' -56.7 NC_004812.1 + 113310 0.69 0.730747
Target:  5'- -gUUUCCCaacgGCaCCGUGaUUCACCUUCu -3'
miRNA:   3'- caAGAGGGa---CG-GGCAC-GAGUGGAAGc -5'
21381 5' -56.7 NC_004812.1 + 153293 0.71 0.640228
Target:  5'- cUUC-CCCgagGCCUGgcgcgccgcGCUCGCCUUCGa -3'
miRNA:   3'- cAAGaGGGa--CGGGCa--------CGAGUGGAAGC- -5'
21381 5' -56.7 NC_004812.1 + 27785 0.71 0.640228
Target:  5'- cUUC-CCCgagGCCUGgcgcgccgcGCUCGCCUUCGa -3'
miRNA:   3'- cAAGaGGGa--CGGGCa--------CGAGUGGAAGC- -5'
21381 5' -56.7 NC_004812.1 + 98471 0.73 0.509757
Target:  5'- -----gCCUGCCCGcUGCUCAUCUUUGa -3'
miRNA:   3'- caagagGGACGGGC-ACGAGUGGAAGC- -5'
21381 5' -56.7 NC_004812.1 + 143073 1.08 0.002935
Target:  5'- uGUUCUCCCUGCCCGUGCUCACCUUCGu -3'
miRNA:   3'- -CAAGAGGGACGGGCACGAGUGGAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.