Results 61 - 80 of 414 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 122269 | 0.66 | 0.802025 |
Target: 5'- --cCaCGGgGACCACG-GgGGGCGCGg -3' miRNA: 3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 104873 | 0.66 | 0.787524 |
Target: 5'- --cCGCGGCGgucgucgucgccgucGCCGucgcCGUggcGCAGGCGCu -3' miRNA: 3'- aaaGCGCCGU---------------UGGU----GCA---CGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 126927 | 0.66 | 0.77454 |
Target: 5'- --cCGaCGGCGGCCGCGgGgAGGgGCc -3' miRNA: 3'- aaaGC-GCCGUUGGUGCaCgUCCgCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 13821 | 0.66 | 0.782917 |
Target: 5'- --cCGCGGCAGCCggGCGUacucccGCAGGguccgguUGCAg -3' miRNA: 3'- aaaGCGCCGUUGG--UGCA------CGUCC-------GCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 129774 | 0.66 | 0.810009 |
Target: 5'- --cCGCGGCGGCguucucgCGCGccaGCAGGgGCGc -3' miRNA: 3'- aaaGCGCCGUUG-------GUGCa--CGUCCgCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 74951 | 0.66 | 0.783841 |
Target: 5'- -gUCGC-GC-GCCGCGgucaGCGGGUGCGc -3' miRNA: 3'- aaAGCGcCGuUGGUGCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 72541 | 0.66 | 0.782917 |
Target: 5'- --cCGCGGCGaacgggaACCGCGccucggGgGGGCGCc -3' miRNA: 3'- aaaGCGCCGU-------UGGUGCa-----CgUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 117366 | 0.66 | 0.77454 |
Target: 5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3' miRNA: 3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 110487 | 0.66 | 0.799335 |
Target: 5'- cUUCGCGaaggucacggacgaGgGGCUgGCGUGCGGGCGCc -3' miRNA: 3'- aAAGCGC--------------CgUUGG-UGCACGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 128221 | 0.66 | 0.793006 |
Target: 5'- --aCGCGGCcggaGGCCagcACG-GCGcGGCGCAg -3' miRNA: 3'- aaaGCGCCG----UUGG---UGCaCGU-CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 147857 | 0.66 | 0.783841 |
Target: 5'- -cUCGCGGCuGCCugGgggGUcggggccgucgAGGCGUu -3' miRNA: 3'- aaAGCGCCGuUGGugCa--CG-----------UCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 134815 | 0.66 | 0.802025 |
Target: 5'- --cCGuCGGguACCGCG-GCGaauGGCGCGc -3' miRNA: 3'- aaaGC-GCCguUGGUGCaCGU---CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 153129 | 0.66 | 0.77454 |
Target: 5'- --cCGCGGCccGCCGCGcUGaC-GGCGCGa -3' miRNA: 3'- aaaGCGCCGu-UGGUGC-AC-GuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 43682 | 0.66 | 0.810889 |
Target: 5'- ---aGCGGCu-CCGCGUugugggucggGCcGGCGCAg -3' miRNA: 3'- aaagCGCCGuuGGUGCA----------CGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 73782 | 0.66 | 0.77454 |
Target: 5'- --cCGCGGgcuCCGCGagcgggGCGGGCGCc -3' miRNA: 3'- aaaGCGCCguuGGUGCa-----CGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 95674 | 0.66 | 0.802025 |
Target: 5'- -gUCGgcgcuguaCGGCAGCCGCGUGgucauUGGGUGCc -3' miRNA: 3'- aaAGC--------GCCGUUGGUGCAC-----GUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 32495 | 0.66 | 0.810889 |
Target: 5'- -gUCgGCGGCGuACCGCGuUGUcGGCgGCAc -3' miRNA: 3'- aaAG-CGCCGU-UGGUGC-ACGuCCG-CGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 56281 | 0.66 | 0.810889 |
Target: 5'- --cCGCGGCGgcccgcucgaggGCCugGUccagcacgcGCAGcGCGCGc -3' miRNA: 3'- aaaGCGCCGU------------UGGugCA---------CGUC-CGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 32986 | 0.66 | 0.810889 |
Target: 5'- -cUCGCGGUccguccGGCCgGCGUucGCGGGCGa- -3' miRNA: 3'- aaAGCGCCG------UUGG-UGCA--CGUCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 20075 | 0.66 | 0.810889 |
Target: 5'- -cUCgGCGGCAGCCAggcCGUGUacaGGGUGa- -3' miRNA: 3'- aaAG-CGCCGUUGGU---GCACG---UCCGCgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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