miRNA display CGI


Results 81 - 100 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 133234 0.66 0.783841
Target:  5'- -aUCGUGGCGACggaCACGgcgGCcGGgGCGg -3'
miRNA:   3'- aaAGCGCCGUUG---GUGCa--CGuCCgCGU- -5'
21382 3' -58 NC_004812.1 + 79436 0.66 0.783841
Target:  5'- ---gGCGGCGgggacggcgccGCCGCGgGCGGGCuGCc -3'
miRNA:   3'- aaagCGCCGU-----------UGGUGCaCGUCCG-CGu -5'
21382 3' -58 NC_004812.1 + 56074 0.66 0.77454
Target:  5'- gUUCGaCGGCGgccucGCCGCGcccgacGUGGGCGCc -3'
miRNA:   3'- aAAGC-GCCGU-----UGGUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 87842 0.66 0.802025
Target:  5'- --gCGCGaGCAGCUcgGCGUGC--GCGCAc -3'
miRNA:   3'- aaaGCGC-CGUUGG--UGCACGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 98919 0.66 0.783841
Target:  5'- gUUUGCGGC-GCaCGCG-GCcGGCGCc -3'
miRNA:   3'- aAAGCGCCGuUG-GUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 148267 0.66 0.77454
Target:  5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3'
miRNA:   3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5'
21382 3' -58 NC_004812.1 + 62776 0.66 0.783841
Target:  5'- --aCGCGGCAGCCGgGaacaGgGGGcCGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGUgCa---CgUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 122269 0.66 0.802025
Target:  5'- --cCaCGGgGACCACG-GgGGGCGCGg -3'
miRNA:   3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 46311 0.66 0.802025
Target:  5'- --aCGgGGCGGgCACGgGCAGGCaCAc -3'
miRNA:   3'- aaaGCgCCGUUgGUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 4207 0.66 0.81959
Target:  5'- ---gGCGGgGACCGCG-GC-GGCGUc -3'
miRNA:   3'- aaagCGCCgUUGGUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 134815 0.66 0.802025
Target:  5'- --cCGuCGGguACCGCG-GCGaauGGCGCGc -3'
miRNA:   3'- aaaGC-GCCguUGGUGCaCGU---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 121890 0.66 0.810889
Target:  5'- -aUCgGCGGCuGCCG-GUGUacgAGGCGCu -3'
miRNA:   3'- aaAG-CGCCGuUGGUgCACG---UCCGCGu -5'
21382 3' -58 NC_004812.1 + 29599 0.66 0.783841
Target:  5'- --gCGCGGCGG-CGCGggccgGCcGGCGCu -3'
miRNA:   3'- aaaGCGCCGUUgGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 47038 0.66 0.783841
Target:  5'- --aCG-GGCAGCgggguuUGCGUGCGGGCGUc -3'
miRNA:   3'- aaaGCgCCGUUG------GUGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 114278 0.67 0.725309
Target:  5'- --cCGCGGCGccgacacACCccCGggcUGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGU-------UGGu-GC---ACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 23427 0.67 0.726298
Target:  5'- --gCGuCGGCGACgACGgugGUcgGGGCGCGa -3'
miRNA:   3'- aaaGC-GCCGUUGgUGCa--CG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 122981 0.67 0.755562
Target:  5'- --gCGCaugGGCAGCCACGUcuucagGCAGGggaUGCAg -3'
miRNA:   3'- aaaGCG---CCGUUGGUGCA------CGUCC---GCGU- -5'
21382 3' -58 NC_004812.1 + 130160 0.67 0.755562
Target:  5'- --gCGcCGGCGGCCuCGUaGCGccGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGGuGCA-CGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 69562 0.67 0.755562
Target:  5'- --cCGCGGCGccgGCCGCGccGCAGccgccuccgaGCGCGa -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCa-CGUC----------CGCGU- -5'
21382 3' -58 NC_004812.1 + 75442 0.67 0.755562
Target:  5'- --cCGCGGCGGCCGgGUcGCcgcggAGGCGg- -3'
miRNA:   3'- aaaGCGCCGUUGGUgCA-CG-----UCCGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.