miRNA display CGI


Results 101 - 120 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 3643 0.67 0.740062
Target:  5'- --gCGCGGCGccgcCCGCGUcugcgucggccagcaGgGGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUu---GGUGCA---------------CgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 48022 0.67 0.754601
Target:  5'- --gCGUGGUuaGGCCGCGcUGCccgagcgGGGCGCGc -3'
miRNA:   3'- aaaGCGCCG--UUGGUGC-ACG-------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 121309 0.67 0.745905
Target:  5'- --cCGCGGUGAUCGC--GCGGGUGCu -3'
miRNA:   3'- aaaGCGCCGUUGGUGcaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 55971 0.67 0.754601
Target:  5'- --gCGCGGCucgcGCCGcCGUGCGcgcgauccuggccGGCGCc -3'
miRNA:   3'- aaaGCGCCGu---UGGU-GCACGU-------------CCGCGu -5'
21382 3' -58 NC_004812.1 + 152183 0.67 0.745905
Target:  5'- --aCGCGGCccggGGCCGCcucggGCAGGCGa- -3'
miRNA:   3'- aaaGCGCCG----UUGGUGca---CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 2161 0.67 0.745905
Target:  5'- -cUCGCGGCGGcggccaccuCCACGgcgGC-GGCGUc -3'
miRNA:   3'- aaAGCGCCGUU---------GGUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 124707 0.67 0.744933
Target:  5'- -cUCGUGGaguggcuCGACCGCGggugGgAGGCGCu -3'
miRNA:   3'- aaAGCGCC-------GUUGGUGCa---CgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 100577 0.67 0.745905
Target:  5'- ---gGUGGCGGCCGuCGaGCuGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGU-GCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 108489 0.67 0.745905
Target:  5'- -gUCGCGGuCAACgGCGccaGCgcccgcacgGGGCGCAc -3'
miRNA:   3'- aaAGCGCC-GUUGgUGCa--CG---------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 95587 0.67 0.745905
Target:  5'- ---gGCcGCGcCCGCGcGCGGGCGCGg -3'
miRNA:   3'- aaagCGcCGUuGGUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 109947 0.67 0.745905
Target:  5'- --gCGCGGCGcCCugGcgGCcguGGCGCu -3'
miRNA:   3'- aaaGCGCCGUuGGugCa-CGu--CCGCGu -5'
21382 3' -58 NC_004812.1 + 71913 0.67 0.736147
Target:  5'- --gCGCGGC-GCCGCGggcgcUGCAgcggcgaggacGGCGCGg -3'
miRNA:   3'- aaaGCGCCGuUGGUGC-----ACGU-----------CCGCGU- -5'
21382 3' -58 NC_004812.1 + 148935 0.67 0.726298
Target:  5'- --gCGuCGGCGACgACGgugGUcgGGGCGCGa -3'
miRNA:   3'- aaaGC-GCCGUUGgUGCa--CG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 151709 0.67 0.726298
Target:  5'- ---aGCGGCGGCgCGCGcGCgccgccguggccGGGCGCGa -3'
miRNA:   3'- aaagCGCCGUUG-GUGCaCG------------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 79104 0.67 0.745905
Target:  5'- --aCGgGGUAGCgGCGUGCc-GCGCGg -3'
miRNA:   3'- aaaGCgCCGUUGgUGCACGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 154026 0.67 0.726298
Target:  5'- -gUCgGCGGCGGCgGCGUcGgAGGCGgGg -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCA-CgUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 28635 0.67 0.726298
Target:  5'- --cCGcCGGCGccccggacuuccGCCGCG-GCgAGGCGCAc -3'
miRNA:   3'- aaaGC-GCCGU------------UGGUGCaCG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 30345 0.67 0.726298
Target:  5'- --cCGCGGC-GCCGgGagGCgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGGUgCa-CG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 54606 0.67 0.726298
Target:  5'- -cUCGCGGCGgcGCCGCGaGUc-GCGCGa -3'
miRNA:   3'- aaAGCGCCGU--UGGUGCaCGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 107094 0.67 0.735166
Target:  5'- -cUCGCcgacgggGGuCGugUugGUGCGGGUGCGg -3'
miRNA:   3'- aaAGCG-------CC-GUugGugCACGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.