miRNA display CGI


Results 121 - 140 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 154026 0.67 0.726298
Target:  5'- -gUCgGCGGCGGCgGCGUcGgAGGCGgGg -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCA-CgUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 39233 0.67 0.726298
Target:  5'- --gCGCcGCcGCCGCGcUGcCGGGCGCGg -3'
miRNA:   3'- aaaGCGcCGuUGGUGC-AC-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 30345 0.67 0.726298
Target:  5'- --cCGCGGC-GCCGgGagGCgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGGUgCa-CG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 28635 0.67 0.726298
Target:  5'- --cCGcCGGCGccccggacuuccGCCGCG-GCgAGGCGCAc -3'
miRNA:   3'- aaaGC-GCCGU------------UGGUGCaCG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 137761 0.67 0.76511
Target:  5'- gUUUCGCaGUAccGCCACcggGCGGcGCGCAa -3'
miRNA:   3'- -AAAGCGcCGU--UGGUGca-CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 23587 0.67 0.745905
Target:  5'- ---gGCGGCGcGCCGCGggGCGGGgGUu -3'
miRNA:   3'- aaagCGCCGU-UGGUGCa-CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 48607 0.67 0.745905
Target:  5'- --cCGCGGCcauccggacGACgCGCGUGCGGGaaCGCc -3'
miRNA:   3'- aaaGCGCCG---------UUG-GUGCACGUCC--GCGu -5'
21382 3' -58 NC_004812.1 + 51433 0.67 0.745905
Target:  5'- -cUCGCaGGCAcgcgGCCGCucGCAGGCGgGg -3'
miRNA:   3'- aaAGCG-CCGU----UGGUGcaCGUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 3170 0.67 0.759395
Target:  5'- -cUCGggguCGGCGACCugGcGCAuccaggcggcggcgcGGCGCAg -3'
miRNA:   3'- aaAGC----GCCGUUGGugCaCGU---------------CCGCGU- -5'
21382 3' -58 NC_004812.1 + 130714 0.67 0.755562
Target:  5'- --cCGCGGC-GCUggGcGCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGugCaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 106730 0.67 0.755562
Target:  5'- -gUCgGCGGCGggGCCcauCGUcCGGGCGCGg -3'
miRNA:   3'- aaAG-CGCCGU--UGGu--GCAcGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 133537 0.67 0.755562
Target:  5'- -gUCGCgugGGUGGCCACcaUGCGGGcCGCGg -3'
miRNA:   3'- aaAGCG---CCGUUGGUGc-ACGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 4652 0.67 0.755562
Target:  5'- --gCGcCGGCGGCCuCGUaGCGccGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGGuGCA-CGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 153882 0.67 0.755562
Target:  5'- --gCGCaugGGCAGCCACGUcuucagGCAGGggaUGCAg -3'
miRNA:   3'- aaaGCG---CCGUUGGUGCA------CGUCC---GCGU- -5'
21382 3' -58 NC_004812.1 + 55971 0.67 0.754601
Target:  5'- --gCGCGGCucgcGCCGcCGUGCGcgcgauccuggccGGCGCc -3'
miRNA:   3'- aaaGCGCCGu---UGGU-GCACGU-------------CCGCGu -5'
21382 3' -58 NC_004812.1 + 48022 0.67 0.754601
Target:  5'- --gCGUGGUuaGGCCGCGcUGCccgagcgGGGCGCGc -3'
miRNA:   3'- aaaGCGCCG--UUGGUGC-ACG-------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 152183 0.67 0.745905
Target:  5'- --aCGCGGCccggGGCCGCcucggGCAGGCGa- -3'
miRNA:   3'- aaaGCGCCG----UUGGUGca---CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 121309 0.67 0.745905
Target:  5'- --cCGCGGUGAUCGC--GCGGGUGCu -3'
miRNA:   3'- aaaGCGCCGUUGGUGcaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 120367 0.67 0.745905
Target:  5'- --cCGCGGgGGCgCGCGgccGgGGGCGCGu -3'
miRNA:   3'- aaaGCGCCgUUG-GUGCa--CgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 100577 0.67 0.745905
Target:  5'- ---gGUGGCGGCCGuCGaGCuGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGU-GCaCGuCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.