miRNA display CGI


Results 161 - 180 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 74647 0.67 0.720349
Target:  5'- -cUCGUGGUcggggacgcccugcgGACCACGUGCc-GCGCc -3'
miRNA:   3'- aaAGCGCCG---------------UUGGUGCACGucCGCGu -5'
21382 3' -58 NC_004812.1 + 4652 0.67 0.755562
Target:  5'- --gCGcCGGCGGCCuCGUaGCGccGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGGuGCA-CGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 133537 0.67 0.755562
Target:  5'- -gUCGCgugGGUGGCCACcaUGCGGGcCGCGg -3'
miRNA:   3'- aaAGCG---CCGUUGGUGc-ACGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 138046 0.67 0.755562
Target:  5'- ---gGCGGCGGCgGCGgaGCGGGCccGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCa-CGUCCG--CGU- -5'
21382 3' -58 NC_004812.1 + 128946 0.67 0.712375
Target:  5'- --aCGCGGCGccagccGCCGCGggggucgggcccgGCGGGCGg- -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCa------------CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 62125 0.67 0.713374
Target:  5'- --gCGCGGCGGCCcggaggccggaucgGCGgcGCGGGCGg- -3'
miRNA:   3'- aaaGCGCCGUUGG--------------UGCa-CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 98668 0.67 0.716368
Target:  5'- --aCGCGGgGgucgaGCCGgG-GCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCgU-----UGGUgCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 67960 0.67 0.716368
Target:  5'- -cUCGaaGGCGGCCACGaagaUGCcggcGGCGCAc -3'
miRNA:   3'- aaAGCg-CCGUUGGUGC----ACGu---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 30345 0.67 0.726298
Target:  5'- --cCGCGGC-GCCGgGagGCgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGGUgCa-CG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 39233 0.67 0.726298
Target:  5'- --gCGCcGCcGCCGCGcUGcCGGGCGCGg -3'
miRNA:   3'- aaaGCGcCGuUGGUGC-AC-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 17956 0.67 0.716368
Target:  5'- -gUCGCccgGGCGACgGCGgccGuCAGGCGCc -3'
miRNA:   3'- aaAGCG---CCGUUGgUGCa--C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 26201 0.67 0.726298
Target:  5'- ---aGCGGCGGCgCGCGcGCgccgccguggccGGGCGCGa -3'
miRNA:   3'- aaagCGCCGUUG-GUGCaCG------------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 51899 0.67 0.726298
Target:  5'- --gCGUGGCGGCCACGcacgcccGCAuGGCgGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCa------CGU-CCG-CGU- -5'
21382 3' -58 NC_004812.1 + 104348 0.67 0.726298
Target:  5'- cUUCGacgaGGcCAAgCugGcGCAGGCGCGg -3'
miRNA:   3'- aAAGCg---CC-GUUgGugCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 28635 0.67 0.726298
Target:  5'- --cCGcCGGCGccccggacuuccGCCGCG-GCgAGGCGCAc -3'
miRNA:   3'- aaaGC-GCCGU------------UGGUGCaCG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 55971 0.67 0.754601
Target:  5'- --gCGCGGCucgcGCCGcCGUGCGcgcgauccuggccGGCGCc -3'
miRNA:   3'- aaaGCGCCGu---UGGU-GCACGU-------------CCGCGu -5'
21382 3' -58 NC_004812.1 + 46138 0.67 0.764161
Target:  5'- cUUCGCgaaguacGGCAGCCGCaggcuGUGUccguGGGCGUAc -3'
miRNA:   3'- aAAGCG-------CCGUUGGUG-----CACG----UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 67208 0.67 0.716368
Target:  5'- --cCGCGGCGGCgGCGcccGCGGGCu-- -3'
miRNA:   3'- aaaGCGCCGUUGgUGCa--CGUCCGcgu -5'
21382 3' -58 NC_004812.1 + 54606 0.67 0.726298
Target:  5'- -cUCGCGGCGgcGCCGCGaGUc-GCGCGa -3'
miRNA:   3'- aaAGCGCCGU--UGGUGCaCGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 154026 0.67 0.726298
Target:  5'- -gUCgGCGGCGGCgGCGUcGgAGGCGgGg -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCA-CgUCCGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.