miRNA display CGI


Results 81 - 100 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 68175 0.71 0.494503
Target:  5'- ---gGuCGGCGGCCGCGgGCGGGgGCGc -3'
miRNA:   3'- aaagC-GCCGUUGGUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 40018 0.71 0.504163
Target:  5'- --aCGCGGCGGcCCGCG-GCGGGC-CGg -3'
miRNA:   3'- aaaGCGCCGUU-GGUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 2608 0.71 0.533608
Target:  5'- --gCGCGGUAgcgcacguuggcGCCGCGgccCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU------------UGGUGCac-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 108729 0.71 0.494503
Target:  5'- -cUCGUGGCGcgcuACUACcugcUGCAGGCGCu -3'
miRNA:   3'- aaAGCGCCGU----UGGUGc---ACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 85693 0.7 0.594107
Target:  5'- -aUCGCuGGCGGCCagACcUGCGGGgGCGg -3'
miRNA:   3'- aaAGCG-CCGUUGG--UGcACGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 73219 0.7 0.553575
Target:  5'- -cUCGCGGCcGCCcuGCGggucggGCGGGCGg- -3'
miRNA:   3'- aaAGCGCCGuUGG--UGCa-----CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 131561 0.7 0.553575
Target:  5'- --gCGCGGCuaucgacACCGC--GCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGu------UGGUGcaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 96746 0.7 0.543561
Target:  5'- --gCGuCGGCGuCUACGUGCGGcGCGCc -3'
miRNA:   3'- aaaGC-GCCGUuGGUGCACGUC-CGCGu -5'
21382 3' -58 NC_004812.1 + 51636 0.7 0.557596
Target:  5'- --gCGCGGCAACaCACGUGgauguugacgucggcCGGGcCGCGg -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCAC---------------GUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 20029 0.7 0.562633
Target:  5'- -gUCGCGGCAaaacagguagagcAgCACGUGgAGGCGg- -3'
miRNA:   3'- aaAGCGCCGU-------------UgGUGCACgUCCGCgu -5'
21382 3' -58 NC_004812.1 + 117924 0.7 0.553575
Target:  5'- --cCGCGGCcuacacGGCCGCGccGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCG------UUGGUGCa-CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 32404 0.7 0.594107
Target:  5'- --cCGCGGCcucggucGCCGCc-GCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGu------UGGUGcaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 128998 0.7 0.594107
Target:  5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 62895 0.7 0.594107
Target:  5'- --gCGCGuGCccuacuACCGCGUGCAcGCGCGg -3'
miRNA:   3'- aaaGCGC-CGu-----UGGUGCACGUcCGCGU- -5'
21382 3' -58 NC_004812.1 + 66305 0.7 0.583915
Target:  5'- -cUCGCGGCuGGCgGCGccCAGGCGCc -3'
miRNA:   3'- aaAGCGCCG-UUGgUGCacGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 44989 0.7 0.583915
Target:  5'- --cCGCGGCcacgAGCCAgGUGCcggAGGCGUu -3'
miRNA:   3'- aaaGCGCCG----UUGGUgCACG---UCCGCGu -5'
21382 3' -58 NC_004812.1 + 31991 0.7 0.583915
Target:  5'- --cCGCGGCAgguccGCCACGgagGCGGG-GCc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa--CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 101106 0.7 0.573758
Target:  5'- --aCGCGGCAcUCGCGgucgaGCAuGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUuGGUGCa----CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 127998 0.7 0.563642
Target:  5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3'
miRNA:   3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 74058 0.7 0.563642
Target:  5'- -cUCG-GGCGGCaGCG-GCGGGCGCGc -3'
miRNA:   3'- aaAGCgCCGUUGgUGCaCGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.