miRNA display CGI


Results 101 - 120 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 47601 0.7 0.583915
Target:  5'- --gCGCaGGCAGCCGCGgucGUGGGCGa- -3'
miRNA:   3'- aaaGCG-CCGUUGGUGCa--CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 77100 0.7 0.572744
Target:  5'- --gCGCGGCGAUgACGUugcccccGCGGGgGCGg -3'
miRNA:   3'- aaaGCGCCGUUGgUGCA-------CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 15966 0.7 0.563642
Target:  5'- --gCGUGGCGccGCCGCGcgGC-GGCGCGu -3'
miRNA:   3'- aaaGCGCCGU--UGGUGCa-CGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 2490 0.7 0.563642
Target:  5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3'
miRNA:   3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 92003 0.7 0.553575
Target:  5'- ---gGUGGCcGCgACGUGCAGGCaggGCAg -3'
miRNA:   3'- aaagCGCCGuUGgUGCACGUCCG---CGU- -5'
21382 3' -58 NC_004812.1 + 138261 0.7 0.552571
Target:  5'- --cCGCGGCGgccgcggucgcgcGCCGCGcccUGCGGGCGg- -3'
miRNA:   3'- aaaGCGCCGU-------------UGGUGC---ACGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 143306 0.7 0.543561
Target:  5'- -aUCGCGGUGACCACcagGCu-GCGCAa -3'
miRNA:   3'- aaAGCGCCGUUGGUGca-CGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 3490 0.7 0.594107
Target:  5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 100335 0.7 0.594107
Target:  5'- -cUCGagcgGGCcGCCGCGgGCgAGGCGCAg -3'
miRNA:   3'- aaAGCg---CCGuUGGUGCaCG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 135813 0.7 0.594107
Target:  5'- --gUGCGGCGGCCugGcGCAGcgccuGCGCu -3'
miRNA:   3'- aaaGCGCCGUUGGugCaCGUC-----CGCGu -5'
21382 3' -58 NC_004812.1 + 66305 0.7 0.583915
Target:  5'- -cUCGCGGCuGGCgGCGccCAGGCGCc -3'
miRNA:   3'- aaAGCGCCG-UUGgUGCacGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 62895 0.7 0.594107
Target:  5'- --gCGCGuGCccuacuACCGCGUGCAcGCGCGg -3'
miRNA:   3'- aaaGCGC-CGu-----UGGUGCACGUcCGCGU- -5'
21382 3' -58 NC_004812.1 + 32404 0.7 0.594107
Target:  5'- --cCGCGGCcucggucGCCGCc-GCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGu------UGGUGcaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 53261 0.7 0.543561
Target:  5'- --gUGuuGCGACCugGaGCAGGCGCGc -3'
miRNA:   3'- aaaGCgcCGUUGGugCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 85693 0.7 0.594107
Target:  5'- -aUCGCuGGCGGCCagACcUGCGGGgGCGg -3'
miRNA:   3'- aaAGCG-CCGUUGG--UGcACGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 20029 0.7 0.562633
Target:  5'- -gUCGCGGCAaaacagguagagcAgCACGUGgAGGCGg- -3'
miRNA:   3'- aaAGCGCCGU-------------UgGUGCACgUCCGCgu -5'
21382 3' -58 NC_004812.1 + 77576 0.69 0.603304
Target:  5'- --gCGCGGaGGCCACGUgguaccggcggucGCGGGCGUc -3'
miRNA:   3'- aaaGCGCCgUUGGUGCA-------------CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 155984 0.69 0.64534
Target:  5'- -cUCGgGGUugcagcCCGCGUGCucgcGGCGCGg -3'
miRNA:   3'- aaAGCgCCGuu----GGUGCACGu---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 129424 0.69 0.604327
Target:  5'- --gCGCGGCGgcgggGCCGCGcggcggcgGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa-------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 46293 0.69 0.635082
Target:  5'- ---gGCGGCcggaGGCCGCG-GCGGGcCGCGc -3'
miRNA:   3'- aaagCGCCG----UUGGUGCaCGUCC-GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.