miRNA display CGI


Results 121 - 140 of 414 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 19142 0.69 0.635082
Target:  5'- ---gGCGGCcagcGCCGCG-GgGGGCGCGg -3'
miRNA:   3'- aaagCGCCGu---UGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 101304 0.69 0.635082
Target:  5'- --gCGuCGGCccgcGCCgagcccaccucgGCGUGCAGGCGCu -3'
miRNA:   3'- aaaGC-GCCGu---UGG------------UGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 133033 0.69 0.628926
Target:  5'- --cCGCGGCGcGCCGCcccucccgcccacucGgggGCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGUG---------------Ca--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 120251 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 120134 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 102010 0.69 0.624822
Target:  5'- -cUCGCGGCGccGCCGCGagGguGGCuCGu -3'
miRNA:   3'- aaAGCGCCGU--UGGUGCa-CguCCGcGU- -5'
21382 3' -58 NC_004812.1 + 72228 0.69 0.641238
Target:  5'- -cUCGCGGacuGCgGCGgggcguccggucgGCGGGCGCGa -3'
miRNA:   3'- aaAGCGCCgu-UGgUGCa------------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 95756 0.69 0.644314
Target:  5'- -gUCGCGGCGGCCGCGcacaccgagcccgUGgagcCGGGgGCGg -3'
miRNA:   3'- aaAGCGCCGUUGGUGC-------------AC----GUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 31667 0.69 0.64534
Target:  5'- --cCGgGGaCAGCCGC-UGgGGGCGCAg -3'
miRNA:   3'- aaaGCgCC-GUUGGUGcACgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 77576 0.69 0.603304
Target:  5'- --gCGCGGaGGCCACGUgguaccggcggucGCGGGCGUc -3'
miRNA:   3'- aaaGCGCCgUUGGUGCA-------------CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 129424 0.69 0.604327
Target:  5'- --gCGCGGCGgcgggGCCGCGcggcggcgGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa-------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 97318 0.69 0.614568
Target:  5'- -cUCGCGGCGGgCGgGUGCc-GCGCGc -3'
miRNA:   3'- aaAGCGCCGUUgGUgCACGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 153176 0.69 0.614568
Target:  5'- --cCGCGGCGgcuggcGCCGCGUGCcgccgGGGCcCAg -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCACG-----UCCGcGU- -5'
21382 3' -58 NC_004812.1 + 155984 0.69 0.64534
Target:  5'- -cUCGgGGUugcagcCCGCGUGCucgcGGCGCGg -3'
miRNA:   3'- aaAGCgCCGuu----GGUGCACGu---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 129395 0.69 0.64534
Target:  5'- -cUCGC-GCAGCCAgaGgcGCGGGCGCGg -3'
miRNA:   3'- aaAGCGcCGUUGGUg-Ca-CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 50329 0.69 0.64534
Target:  5'- --aCGUGGCccuGugCGCGaucgGCAGGCGCc -3'
miRNA:   3'- aaaGCGCCG---UugGUGCa---CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 138113 0.69 0.623797
Target:  5'- -cUCGCGGCGGucgucugccugugUCugGgccccGCGGGCGCGg -3'
miRNA:   3'- aaAGCGCCGUU-------------GGugCa----CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3867 0.69 0.64534
Target:  5'- --cCGCGGCcGCCGCGgcccGCAaGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa---CGUcCGCGu -5'
21382 3' -58 NC_004812.1 + 129339 0.69 0.64534
Target:  5'- --aCGCGGagguCCcCGcGCAGGCGCAu -3'
miRNA:   3'- aaaGCGCCguu-GGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 57975 0.69 0.624822
Target:  5'- cUUCaCGGCGGCCACGaaCAcGGCGCu -3'
miRNA:   3'- aAAGcGCCGUUGGUGCacGU-CCGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.