miRNA display CGI


Results 61 - 80 of 414 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 131089 0.72 0.475442
Target:  5'- gUUCGCGGCGGCC-CGUcgGCGGGguccUGCGa -3'
miRNA:   3'- aAAGCGCCGUUGGuGCA--CGUCC----GCGU- -5'
21382 3' -58 NC_004812.1 + 25356 0.72 0.475442
Target:  5'- ---gGCGGCGACCACGggcucGCcGGCGUc -3'
miRNA:   3'- aaagCGCCGUUGGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 5581 0.72 0.475442
Target:  5'- gUUCGCGGCGGCC-CGUcgGCGGGguccUGCGa -3'
miRNA:   3'- aAAGCGCCGUUGGuGCA--CGUCC----GCGU- -5'
21382 3' -58 NC_004812.1 + 27345 0.72 0.475442
Target:  5'- -gUCGcCGGCGccGCCGCGccgcUGCuGGCGCGc -3'
miRNA:   3'- aaAGC-GCCGU--UGGUGC----ACGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 94252 0.71 0.484928
Target:  5'- gUUCGCGcCGAcCCACGcgccGCGGGCGCGc -3'
miRNA:   3'- aAAGCGCcGUU-GGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 119483 0.71 0.484928
Target:  5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 112721 0.71 0.484928
Target:  5'- ---gGCGGcCGGCCGCG-GcCGGGCGCGa -3'
miRNA:   3'- aaagCGCC-GUUGGUGCaC-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 65761 0.71 0.484928
Target:  5'- --cCGCGGCGccggcuuCCGCGccGCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGUu------GGUGCa-CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 150384 0.71 0.484928
Target:  5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 108729 0.71 0.494503
Target:  5'- -cUCGUGGCGcgcuACUACcugcUGCAGGCGCu -3'
miRNA:   3'- aaAGCGCCGU----UGGUGc---ACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 68175 0.71 0.494503
Target:  5'- ---gGuCGGCGGCCGCGgGCGGGgGCGc -3'
miRNA:   3'- aaagC-GCCGUUGGUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 80473 0.71 0.494503
Target:  5'- -gUCGCGGCGA-CGCG-GCGGcGCGCc -3'
miRNA:   3'- aaAGCGCCGUUgGUGCaCGUC-CGCGu -5'
21382 3' -58 NC_004812.1 + 107194 0.71 0.504163
Target:  5'- --aCGCGGCGGCC-CGggGCcacGGCGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGuGCa-CGu--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 40018 0.71 0.504163
Target:  5'- --aCGCGGCGGcCCGCG-GCGGGC-CGg -3'
miRNA:   3'- aaaGCGCCGUU-GGUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 13575 0.71 0.513903
Target:  5'- -cUCGCGcGCcACCuugagguggGCGUGCAGGCGg- -3'
miRNA:   3'- aaAGCGC-CGuUGG---------UGCACGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 83207 0.71 0.52372
Target:  5'- --gCGCGGCGGCCGCGcuCGGGgGCc -3'
miRNA:   3'- aaaGCGCCGUUGGUGCacGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 107693 0.71 0.52372
Target:  5'- --gCGUGGCGACCACG-GCGuGGCccGCGa -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-CCG--CGU- -5'
21382 3' -58 NC_004812.1 + 94326 0.71 0.52372
Target:  5'- --gCGCGGCGgugACCGCGUgggucuccgcGCGcGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCA----------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 125258 0.71 0.532616
Target:  5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 156159 0.71 0.532616
Target:  5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.