miRNA display CGI


Results 101 - 120 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 127998 0.7 0.563642
Target:  5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3'
miRNA:   3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 77100 0.7 0.572744
Target:  5'- --gCGCGGCGAUgACGUugcccccGCGGGgGCGg -3'
miRNA:   3'- aaaGCGCCGUUGgUGCA-------CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 101106 0.7 0.573758
Target:  5'- --aCGCGGCAcUCGCGgucgaGCAuGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUuGGUGCa----CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 31991 0.7 0.583915
Target:  5'- --cCGCGGCAgguccGCCACGgagGCGGG-GCc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa--CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 29917 0.7 0.583915
Target:  5'- -gUgGCGGCGGCgACG-GCGacGGCGCGa -3'
miRNA:   3'- aaAgCGCCGUUGgUGCaCGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 47601 0.7 0.583915
Target:  5'- --gCGCaGGCAGCCGCGgucGUGGGCGa- -3'
miRNA:   3'- aaaGCG-CCGUUGGUGCa--CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 48174 0.7 0.583915
Target:  5'- -aUCGCgaagguggccucGGCGucgaggguccgcGCCACGUGCGccGGCGCGa -3'
miRNA:   3'- aaAGCG------------CCGU------------UGGUGCACGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 44989 0.7 0.583915
Target:  5'- --cCGCGGCcacgAGCCAgGUGCcggAGGCGUu -3'
miRNA:   3'- aaaGCGCCG----UUGGUgCACG---UCCGCGu -5'
21382 3' -58 NC_004812.1 + 66305 0.7 0.583915
Target:  5'- -cUCGCGGCuGGCgGCGccCAGGCGCc -3'
miRNA:   3'- aaAGCGCCG-UUGgUGCacGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 85693 0.7 0.594107
Target:  5'- -aUCGCuGGCGGCCagACcUGCGGGgGCGg -3'
miRNA:   3'- aaAGCG-CCGUUGG--UGcACGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 3490 0.7 0.594107
Target:  5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 100335 0.7 0.594107
Target:  5'- -cUCGagcgGGCcGCCGCGgGCgAGGCGCAg -3'
miRNA:   3'- aaAGCg---CCGuUGGUGCaCG-UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 135813 0.7 0.594107
Target:  5'- --gUGCGGCGGCCugGcGCAGcgccuGCGCu -3'
miRNA:   3'- aaaGCGCCGUUGGugCaCGUC-----CGCGu -5'
21382 3' -58 NC_004812.1 + 128998 0.7 0.594107
Target:  5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 62895 0.7 0.594107
Target:  5'- --gCGCGuGCccuacuACCGCGUGCAcGCGCGg -3'
miRNA:   3'- aaaGCGC-CGu-----UGGUGCACGUcCGCGU- -5'
21382 3' -58 NC_004812.1 + 32404 0.7 0.594107
Target:  5'- --cCGCGGCcucggucGCCGCc-GCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGu------UGGUGcaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 77576 0.69 0.603304
Target:  5'- --gCGCGGaGGCCACGUgguaccggcggucGCGGGCGUc -3'
miRNA:   3'- aaaGCGCCgUUGGUGCA-------------CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 130396 0.69 0.604327
Target:  5'- -gUCGCGccCGGCCACG-GCGGcGCGCGc -3'
miRNA:   3'- aaAGCGCc-GUUGGUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 53853 0.69 0.604327
Target:  5'- --cCGCGGCGuagGCCGUGUGCucGGCGUg -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCACGu-CCGCGu -5'
21382 3' -58 NC_004812.1 + 147551 0.69 0.604327
Target:  5'- ---gGCGGCGgguuCCGgGUGCcGGCGCGg -3'
miRNA:   3'- aaagCGCCGUu---GGUgCACGuCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.