miRNA display CGI


Results 121 - 140 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 4888 0.69 0.604327
Target:  5'- -gUCGCGccCGGCCACG-GCGGcGCGCGc -3'
miRNA:   3'- aaAGCGCc-GUUGGUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 3916 0.69 0.604327
Target:  5'- --gCGCGGCGgcgggGCCGCGcggcggcgGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa-------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 18704 0.69 0.604327
Target:  5'- ---aGCGGCAGCCGCaGUaGCuccgcGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGUG-CA-CGu----CCGCGu -5'
21382 3' -58 NC_004812.1 + 124225 0.69 0.604327
Target:  5'- --cCGCGGCGcACCugGcgGCGGGCcugGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGugCa-CGUCCG---CGU- -5'
21382 3' -58 NC_004812.1 + 138302 0.69 0.604327
Target:  5'- -gUCGCGGCGGgCuCGgagGguGGCGCc -3'
miRNA:   3'- aaAGCGCCGUUgGuGCa--CguCCGCGu -5'
21382 3' -58 NC_004812.1 + 129424 0.69 0.604327
Target:  5'- --gCGCGGCGgcgggGCCGCGcggcggcgGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa-------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 130396 0.69 0.604327
Target:  5'- -gUCGCGccCGGCCACG-GCGGcGCGCGc -3'
miRNA:   3'- aaAGCGCc-GUUGGUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 97318 0.69 0.614568
Target:  5'- -cUCGCGGCGGgCGgGUGCc-GCGCGc -3'
miRNA:   3'- aaAGCGCCGUUgGUgCACGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 153176 0.69 0.614568
Target:  5'- --cCGCGGCGgcuggcGCCGCGUGCcgccgGGGCcCAg -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCACG-----UCCGcGU- -5'
21382 3' -58 NC_004812.1 + 72016 0.69 0.614568
Target:  5'- -gUCGCGGCgAGCCcCG-GUGGGuCGCAg -3'
miRNA:   3'- aaAGCGCCG-UUGGuGCaCGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 27668 0.69 0.614568
Target:  5'- --cCGCGGCGgcuggcGCCGCGUGCcgccgGGGCcCAg -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCACG-----UCCGcGU- -5'
21382 3' -58 NC_004812.1 + 138113 0.69 0.623797
Target:  5'- -cUCGCGGCGGucgucugccugugUCugGgccccGCGGGCGCGg -3'
miRNA:   3'- aaAGCGCCGUU-------------GGugCa----CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 80256 0.69 0.624822
Target:  5'- ---gGCGGCGGCCGCGgaccugGCGguggcGGUGCGg -3'
miRNA:   3'- aaagCGCCGUUGGUGCa-----CGU-----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 86981 0.69 0.624822
Target:  5'- --cCGCGGguGCCggaGCG-GCGGGgGCAc -3'
miRNA:   3'- aaaGCGCCguUGG---UGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 151152 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 151035 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 120134 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 102010 0.69 0.624822
Target:  5'- -cUCGCGGCGccGCCGCGagGguGGCuCGu -3'
miRNA:   3'- aaAGCGCCGU--UGGUGCa-CguCCGcGU- -5'
21382 3' -58 NC_004812.1 + 57975 0.69 0.624822
Target:  5'- cUUCaCGGCGGCCACGaaCAcGGCGCu -3'
miRNA:   3'- aAAGcGCCGUUGGUGCacGU-CCGCGu -5'
21382 3' -58 NC_004812.1 + 120251 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.