miRNA display CGI


Results 141 - 160 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 7525 0.69 0.628926
Target:  5'- --cCGCGGCGcGCCGCcccucccgcccacucGgggGCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGUG---------------Ca--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 133033 0.69 0.628926
Target:  5'- --cCGCGGCGcGCCGCcccucccgcccacucGgggGCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGUG---------------Ca--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 101304 0.69 0.635082
Target:  5'- --gCGuCGGCccgcGCCgagcccaccucgGCGUGCAGGCGCu -3'
miRNA:   3'- aaaGC-GCCGu---UGG------------UGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 127737 0.69 0.635082
Target:  5'- --cCGCGGcCAGCgCACGcGC-GGCGCGg -3'
miRNA:   3'- aaaGCGCC-GUUG-GUGCaCGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 55647 0.69 0.635082
Target:  5'- -cUCGCGGaCGuCCGCG-GCGGcGCGCc -3'
miRNA:   3'- aaAGCGCC-GUuGGUGCaCGUC-CGCGu -5'
21382 3' -58 NC_004812.1 + 46293 0.69 0.635082
Target:  5'- ---gGCGGCcggaGGCCGCG-GCGGGcCGCGc -3'
miRNA:   3'- aaagCGCCG----UUGGUGCaCGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 43979 0.69 0.635082
Target:  5'- --gCGUGGCcaccGCCACGUcGgAGGUGCAc -3'
miRNA:   3'- aaaGCGCCGu---UGGUGCA-CgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 19142 0.69 0.635082
Target:  5'- ---gGCGGCcagcGCCGCG-GgGGGCGCGg -3'
miRNA:   3'- aaagCGCCGu---UGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 72228 0.69 0.641238
Target:  5'- -cUCGCGGacuGCgGCGgggcguccggucgGCGGGCGCGa -3'
miRNA:   3'- aaAGCGCCgu-UGgUGCa------------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 21150 0.69 0.644314
Target:  5'- --cCGCGGCGggggucucggcguGCCGCGggacGCcgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU-------------UGGUGCa---CG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 51624 0.69 0.644314
Target:  5'- --cCGCGGCGgcccgcgGCCGCGUGC--GCGCc -3'
miRNA:   3'- aaaGCGCCGU-------UGGUGCACGucCGCGu -5'
21382 3' -58 NC_004812.1 + 95756 0.69 0.644314
Target:  5'- -gUCGCGGCGGCCGCGcacaccgagcccgUGgagcCGGGgGCGg -3'
miRNA:   3'- aaAGCGCCGUUGGUGC-------------AC----GUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 3831 0.69 0.64534
Target:  5'- --aCGCGGagguCCcCGcGCAGGCGCAu -3'
miRNA:   3'- aaaGCGCCguu-GGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3887 0.69 0.64534
Target:  5'- -cUCGC-GCAGCCAgaGgcGCGGGCGCGg -3'
miRNA:   3'- aaAGCGcCGUUGGUg-Ca-CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 155984 0.69 0.64534
Target:  5'- -cUCGgGGUugcagcCCGCGUGCucgcGGCGCGg -3'
miRNA:   3'- aaAGCgCCGuu----GGUGCACGu---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 129395 0.69 0.64534
Target:  5'- -cUCGC-GCAGCCAgaGgcGCGGGCGCGg -3'
miRNA:   3'- aaAGCGcCGUUGGUg-Ca-CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 50329 0.69 0.64534
Target:  5'- --aCGUGGCccuGugCGCGaucgGCAGGCGCc -3'
miRNA:   3'- aaaGCGCCG---UugGUGCa---CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 3867 0.69 0.64534
Target:  5'- --cCGCGGCcGCCGCGgcccGCAaGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa---CGUcCGCGu -5'
21382 3' -58 NC_004812.1 + 129339 0.69 0.64534
Target:  5'- --aCGCGGagguCCcCGcGCAGGCGCAu -3'
miRNA:   3'- aaaGCGCCguu-GGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 31667 0.69 0.64534
Target:  5'- --cCGgGGaCAGCCGC-UGgGGGCGCAg -3'
miRNA:   3'- aaaGCgCC-GUUGGUGcACgUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.