miRNA display CGI


Results 81 - 100 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 56074 0.66 0.77454
Target:  5'- gUUCGaCGGCGgccucGCCGCGcccgacGUGGGCGCc -3'
miRNA:   3'- aAAGC-GCCGU-----UGGUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 20163 0.66 0.77454
Target:  5'- -aUCgGCGGCGcucgggccccgACCcggGCGaGCGGGCGCGu -3'
miRNA:   3'- aaAG-CGCCGU-----------UGG---UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 4798 0.66 0.77454
Target:  5'- -gUCGCGGUAGCgGgCGUagaAGGCGCc -3'
miRNA:   3'- aaAGCGCCGUUGgU-GCAcg-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 2809 0.66 0.77454
Target:  5'- --aCGUGGCGGCgCGCGacgGCGGGCcCGu -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 148267 0.66 0.77454
Target:  5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3'
miRNA:   3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5'
21382 3' -58 NC_004812.1 + 153129 0.66 0.77454
Target:  5'- --cCGCGGCccGCCGCGcUGaC-GGCGCGa -3'
miRNA:   3'- aaaGCGCCGu-UGGUGC-AC-GuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 117366 0.66 0.77454
Target:  5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3'
miRNA:   3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5'
21382 3' -58 NC_004812.1 + 73782 0.66 0.77454
Target:  5'- --cCGCGGgcuCCGCGagcgggGCGGGCGCc -3'
miRNA:   3'- aaaGCGCCguuGGUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 18923 0.66 0.77454
Target:  5'- --cCGCGaGCAGCCGgGguUGCAGGCcCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUgC--ACGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 72402 0.66 0.77454
Target:  5'- --cCGCGGau-CCACGUGagcauccgaGGGUGCAc -3'
miRNA:   3'- aaaGCGCCguuGGUGCACg--------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 126927 0.66 0.77454
Target:  5'- --cCGaCGGCGGCCGCGgGgAGGgGCc -3'
miRNA:   3'- aaaGC-GCCGUUGGUGCaCgUCCgCGu -5'
21382 3' -58 NC_004812.1 + 27621 0.66 0.77454
Target:  5'- --cCGCGGCccGCCGCGcUGaC-GGCGCGa -3'
miRNA:   3'- aaaGCGCCGu-UGGUGC-AC-GuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 128317 0.66 0.77454
Target:  5'- --aCGUGGCGGCgCGCGacgGCGGGCcCGu -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 130306 0.66 0.77454
Target:  5'- -gUCGCGGUAGCgGgCGUagaAGGCGCc -3'
miRNA:   3'- aaAGCGCCGUUGgU-GCAcg-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 136282 0.67 0.76511
Target:  5'- --cUGCGcGCGcCCGCGUGgGGGCGg- -3'
miRNA:   3'- aaaGCGC-CGUuGGUGCACgUCCGCgu -5'
21382 3' -58 NC_004812.1 + 3800 0.67 0.76511
Target:  5'- ---gGCGGCGACgGCG-GCcucGGCGCc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGu--CCGCGu -5'
21382 3' -58 NC_004812.1 + 129308 0.67 0.76511
Target:  5'- ---gGCGGCGACgGCG-GCcucGGCGCc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGu--CCGCGu -5'
21382 3' -58 NC_004812.1 + 4369 0.67 0.76511
Target:  5'- ---gGCGGCGGCgGCGUGCgccAGGCc-- -3'
miRNA:   3'- aaagCGCCGUUGgUGCACG---UCCGcgu -5'
21382 3' -58 NC_004812.1 + 28492 0.67 0.76511
Target:  5'- --cCGCGGC-GCCaACGUGCGcuaccGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGG-UGCACGUc----CGCGU- -5'
21382 3' -58 NC_004812.1 + 154000 0.67 0.76511
Target:  5'- --cCGCGGC-GCCaACGUGCGcuaccGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGG-UGCACGUc----CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.