Results 121 - 140 of 414 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 138046 | 0.67 | 0.755562 |
Target: 5'- ---gGCGGCGGCgGCGgaGCGGGCccGCGc -3' miRNA: 3'- aaagCGCCGUUGgUGCa-CGUCCG--CGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 106730 | 0.67 | 0.755562 |
Target: 5'- -gUCgGCGGCGggGCCcauCGUcCGGGCGCGg -3' miRNA: 3'- aaAG-CGCCGU--UGGu--GCAcGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 130160 | 0.67 | 0.755562 |
Target: 5'- --gCGcCGGCGGCCuCGUaGCGccGGCGCGc -3' miRNA: 3'- aaaGC-GCCGUUGGuGCA-CGU--CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 37475 | 0.67 | 0.754601 |
Target: 5'- ---gGCGGUAcggccggucguucGCCGCGUcGCcGGCGCGc -3' miRNA: 3'- aaagCGCCGU-------------UGGUGCA-CGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 55971 | 0.67 | 0.754601 |
Target: 5'- --gCGCGGCucgcGCCGcCGUGCGcgcgauccuggccGGCGCc -3' miRNA: 3'- aaaGCGCCGu---UGGU-GCACGU-------------CCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 48022 | 0.67 | 0.754601 |
Target: 5'- --gCGUGGUuaGGCCGCGcUGCccgagcgGGGCGCGc -3' miRNA: 3'- aaaGCGCCG--UUGGUGC-ACG-------UCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 79104 | 0.67 | 0.745905 |
Target: 5'- --aCGgGGUAGCgGCGUGCc-GCGCGg -3' miRNA: 3'- aaaGCgCCGUUGgUGCACGucCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 95587 | 0.67 | 0.745905 |
Target: 5'- ---gGCcGCGcCCGCGcGCGGGCGCGg -3' miRNA: 3'- aaagCGcCGUuGGUGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 108489 | 0.67 | 0.745905 |
Target: 5'- -gUCGCGGuCAACgGCGccaGCgcccgcacgGGGCGCAc -3' miRNA: 3'- aaAGCGCC-GUUGgUGCa--CG---------UCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 121282 | 0.67 | 0.745905 |
Target: 5'- --aCGCGGCccggGGCCGCcucggGCAGGCGa- -3' miRNA: 3'- aaaGCGCCG----UUGGUGca---CGUCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 127670 | 0.67 | 0.745905 |
Target: 5'- -cUCGCGGCGGcggccaccuCCACGgcgGC-GGCGUc -3' miRNA: 3'- aaAGCGCCGUU---------GGUGCa--CGuCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 149095 | 0.67 | 0.745905 |
Target: 5'- ---gGCGGCGcGCCGCGggGCGGGgGUu -3' miRNA: 3'- aaagCGCCGU-UGGUGCa-CGUCCgCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 48607 | 0.67 | 0.745905 |
Target: 5'- --cCGCGGCcauccggacGACgCGCGUGCGGGaaCGCc -3' miRNA: 3'- aaaGCGCCG---------UUG-GUGCACGUCC--GCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 2228 | 0.67 | 0.745905 |
Target: 5'- --cCGCGGCccAGCgCACGcGC-GGCGCGg -3' miRNA: 3'- aaaGCGCCG--UUG-GUGCaCGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 100577 | 0.67 | 0.745905 |
Target: 5'- ---gGUGGCGGCCGuCGaGCuGGCGCu -3' miRNA: 3'- aaagCGCCGUUGGU-GCaCGuCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 152183 | 0.67 | 0.745905 |
Target: 5'- --aCGCGGCccggGGCCGCcucggGCAGGCGa- -3' miRNA: 3'- aaaGCGCCG----UUGGUGca---CGUCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 121309 | 0.67 | 0.745905 |
Target: 5'- --cCGCGGUGAUCGC--GCGGGUGCu -3' miRNA: 3'- aaaGCGCCGUUGGUGcaCGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 2161 | 0.67 | 0.745905 |
Target: 5'- -cUCGCGGCGGcggccaccuCCACGgcgGC-GGCGUc -3' miRNA: 3'- aaAGCGCCGUU---------GGUGCa--CGuCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 23587 | 0.67 | 0.745905 |
Target: 5'- ---gGCGGCGcGCCGCGggGCGGGgGUu -3' miRNA: 3'- aaagCGCCGU-UGGUGCa-CGUCCgCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 120367 | 0.67 | 0.745905 |
Target: 5'- --cCGCGGgGGCgCGCGgccGgGGGCGCGu -3' miRNA: 3'- aaaGCGCCgUUG-GUGCa--CgUCCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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