miRNA display CGI


Results 61 - 80 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 18704 0.69 0.604327
Target:  5'- ---aGCGGCAGCCGCaGUaGCuccgcGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGUG-CA-CGu----CCGCGu -5'
21382 3' -58 NC_004812.1 + 18923 0.66 0.77454
Target:  5'- --cCGCGaGCAGCCGgGguUGCAGGCcCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUgC--ACGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 19142 0.69 0.635082
Target:  5'- ---gGCGGCcagcGCCGCG-GgGGGCGCGg -3'
miRNA:   3'- aaagCGCCGu---UGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 19699 0.66 0.81959
Target:  5'- --gCGCGGCGGCgCGCG-GCGccGGCGa- -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCaCGU--CCGCgu -5'
21382 3' -58 NC_004812.1 + 20029 0.7 0.562633
Target:  5'- -gUCGCGGCAaaacagguagagcAgCACGUGgAGGCGg- -3'
miRNA:   3'- aaAGCGCCGU-------------UgGUGCACgUCCGCgu -5'
21382 3' -58 NC_004812.1 + 20075 0.66 0.810889
Target:  5'- -cUCgGCGGCAGCCAggcCGUGUacaGGGUGa- -3'
miRNA:   3'- aaAG-CGCCGUUGGU---GCACG---UCCGCgu -5'
21382 3' -58 NC_004812.1 + 20163 0.66 0.77454
Target:  5'- -aUCgGCGGCGcucgggccccgACCcggGCGaGCGGGCGCGu -3'
miRNA:   3'- aaAG-CGCCGU-----------UGG---UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 20316 0.66 0.802025
Target:  5'- --gCGCGcGCAggcACCGCccccacGCGGGCGCGc -3'
miRNA:   3'- aaaGCGC-CGU---UGGUGca----CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 20407 0.68 0.706366
Target:  5'- -cUgGCGGUGGgUGCG-GCAGGCGCu -3'
miRNA:   3'- aaAgCGCCGUUgGUGCaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 21150 0.69 0.644314
Target:  5'- --cCGCGGCGggggucucggcguGCCGCGggacGCcgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU-------------UGGUGCa---CG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 22750 0.68 0.665815
Target:  5'- --gCGCGGCGugguggACCugGUGCguccagguggGGGCGUu -3'
miRNA:   3'- aaaGCGCCGU------UGGugCACG----------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 23427 0.67 0.726298
Target:  5'- --gCGuCGGCGACgACGgugGUcgGGGCGCGa -3'
miRNA:   3'- aaaGC-GCCGUUGgUGCa--CG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 23492 0.67 0.726298
Target:  5'- -gUCGaggGGCugcugucgcACUACGUGCGGGUGCu -3'
miRNA:   3'- aaAGCg--CCGu--------UGGUGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 23587 0.67 0.745905
Target:  5'- ---gGCGGCGcGCCGCGggGCGGGgGUu -3'
miRNA:   3'- aaagCGCCGU-UGGUGCa-CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 24842 0.78 0.195409
Target:  5'- -aUCGCGGCAcgcGCCGCGgGC-GGCGCGg -3'
miRNA:   3'- aaAGCGCCGU---UGGUGCaCGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 25356 0.72 0.475442
Target:  5'- ---gGCGGCGACCACGggcucGCcGGCGUc -3'
miRNA:   3'- aaagCGCCGUUGGUGCa----CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 25895 0.73 0.403199
Target:  5'- --cCGCGGCGcCCGCGcccagcgccGCGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUuGGUGCa--------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 26201 0.67 0.726298
Target:  5'- ---aGCGGCGGCgCGCGcGCgccgccguggccGGGCGCGa -3'
miRNA:   3'- aaagCGCCGUUG-GUGCaCG------------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 26465 0.67 0.764161
Target:  5'- --cCGcCGGCGcgcccgcGCC-CGUGUGGGCGCc -3'
miRNA:   3'- aaaGC-GCCGU-------UGGuGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 26703 0.68 0.676015
Target:  5'- ---gGCGGCGAcggauCCAC--GCAGGCGCGu -3'
miRNA:   3'- aaagCGCCGUU-----GGUGcaCGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.