miRNA display CGI


Results 101 - 120 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 34768 0.69 0.64534
Target:  5'- --cCGCGGCcGCCGCGgcccGCAaGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa---CGUcCGCGu -5'
21382 3' -58 NC_004812.1 + 35255 0.68 0.655586
Target:  5'- -cUCGUGG-GGCgCGCGUGCAacauGGCGCGc -3'
miRNA:   3'- aaAGCGCCgUUG-GUGCACGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 35678 0.74 0.345985
Target:  5'- --cUGUGGC-GCCGCGUGCGcGGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGUGCACGU-CCGCGu -5'
21382 3' -58 NC_004812.1 + 35695 0.73 0.411848
Target:  5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3'
miRNA:   3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 37243 0.68 0.706366
Target:  5'- ---aGgGGCAGCaggggGCG-GCAGGCGCGc -3'
miRNA:   3'- aaagCgCCGUUGg----UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 37475 0.67 0.754601
Target:  5'- ---gGCGGUAcggccggucguucGCCGCGUcGCcGGCGCGc -3'
miRNA:   3'- aaagCGCCGU-------------UGGUGCA-CGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 38039 0.68 0.706366
Target:  5'- ---gGCGGCGACCGuc-GCGGGCGaCAg -3'
miRNA:   3'- aaagCGCCGUUGGUgcaCGUCCGC-GU- -5'
21382 3' -58 NC_004812.1 + 38182 0.75 0.308819
Target:  5'- ---gGCGGCGGCCGCGUGUgAGGcCGCc -3'
miRNA:   3'- aaagCGCCGUUGGUGCACG-UCC-GCGu -5'
21382 3' -58 NC_004812.1 + 38535 0.72 0.429486
Target:  5'- --gCGCGGCGGCCGgG-GUcgGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGUUGGUgCaCG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 39225 0.66 0.793006
Target:  5'- --gCGUGGCccgGGCCACGcgcgugGcCAGGCGCc -3'
miRNA:   3'- aaaGCGCCG---UUGGUGCa-----C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 39233 0.67 0.726298
Target:  5'- --gCGCcGCcGCCGCGcUGcCGGGCGCGg -3'
miRNA:   3'- aaaGCGcCGuUGGUGC-AC-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 39830 0.68 0.68618
Target:  5'- ----aUGGCGGCCGCGUGCccguAGGCGg- -3'
miRNA:   3'- aaagcGCCGUUGGUGCACG----UCCGCgu -5'
21382 3' -58 NC_004812.1 + 40018 0.71 0.504163
Target:  5'- --aCGCGGCGGcCCGCG-GCGGGC-CGg -3'
miRNA:   3'- aaaGCGCCGUU-GGUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 40486 0.68 0.655586
Target:  5'- -cUCGgGGCccgGGCCcCGaggGCGGGCGCGg -3'
miRNA:   3'- aaAGCgCCG---UUGGuGCa--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 41218 0.66 0.783841
Target:  5'- ---gGCGGCGACUACGcgcUGCGGuCGCc -3'
miRNA:   3'- aaagCGCCGUUGGUGC---ACGUCcGCGu -5'
21382 3' -58 NC_004812.1 + 41401 0.67 0.726298
Target:  5'- --cCGaCGGCAACCGCGccuacuucgugUGCgggGGGUGCGu -3'
miRNA:   3'- aaaGC-GCCGUUGGUGC-----------ACG---UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 41933 0.68 0.706366
Target:  5'- --cCGCGGCcgccccugGACCGCGacccggugGCGGGcCGCAc -3'
miRNA:   3'- aaaGCGCCG--------UUGGUGCa-------CGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 43682 0.66 0.810889
Target:  5'- ---aGCGGCu-CCGCGUugugggucggGCcGGCGCAg -3'
miRNA:   3'- aaagCGCCGuuGGUGCA----------CGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 43847 0.75 0.308819
Target:  5'- -cUCGCGGC-GCCgACGUcCGGGCGCGg -3'
miRNA:   3'- aaAGCGCCGuUGG-UGCAcGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 43979 0.69 0.635082
Target:  5'- --gCGUGGCcaccGCCACGUcGgAGGUGCAc -3'
miRNA:   3'- aaaGCGCCGu---UGGUGCA-CgUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.