miRNA display CGI


Results 121 - 140 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 44235 0.68 0.665815
Target:  5'- --gUGUGGCcGCCGCGaguccgGCAGaGCGCGa -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa-----CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 44294 0.67 0.726298
Target:  5'- --cCGCGGcCAGCCGCccG-AGGCGCGa -3'
miRNA:   3'- aaaGCGCC-GUUGGUGcaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 44356 0.68 0.665815
Target:  5'- --gCGCgGGCAAaggGCGUGCccgGGGCGCAg -3'
miRNA:   3'- aaaGCG-CCGUUgg-UGCACG---UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 44989 0.7 0.583915
Target:  5'- --cCGCGGCcacgAGCCAgGUGCcggAGGCGUu -3'
miRNA:   3'- aaaGCGCCG----UUGGUgCACG---UCCGCGu -5'
21382 3' -58 NC_004812.1 + 46138 0.67 0.764161
Target:  5'- cUUCGCgaaguacGGCAGCCGCaggcuGUGUccguGGGCGUAc -3'
miRNA:   3'- aAAGCG-------CCGUUGGUG-----CACG----UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 46293 0.69 0.635082
Target:  5'- ---gGCGGCcggaGGCCGCG-GCGGGcCGCGc -3'
miRNA:   3'- aaagCGCCG----UUGGUGCaCGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 46311 0.66 0.802025
Target:  5'- --aCGgGGCGGgCACGgGCAGGCaCAc -3'
miRNA:   3'- aaaGCgCCGUUgGUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 47007 0.67 0.726298
Target:  5'- --aC-CGGCGACCcgauCGagcGCAGGCGCAu -3'
miRNA:   3'- aaaGcGCCGUUGGu---GCa--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 47038 0.66 0.783841
Target:  5'- --aCG-GGCAGCgggguuUGCGUGCGGGCGUc -3'
miRNA:   3'- aaaGCgCCGUUG------GUGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 47113 0.66 0.816129
Target:  5'- -gUCGCGGCGagacgcagcagccGCCGCacgaugccgcagcccGCGGGCGCc -3'
miRNA:   3'- aaAGCGCCGU-------------UGGUGca-------------CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 47289 0.75 0.313113
Target:  5'- --gCGCGGCGccgccuccagcgccGCCggcgcguACGUGCGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGU--------------UGG-------UGCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 47600 0.67 0.736147
Target:  5'- -gUCGCGGCGACCccgagcgcgccgACGgGCucGGgGCAa -3'
miRNA:   3'- aaAGCGCCGUUGG------------UGCaCGu-CCgCGU- -5'
21382 3' -58 NC_004812.1 + 47601 0.7 0.583915
Target:  5'- --gCGCaGGCAGCCGCGgucGUGGGCGa- -3'
miRNA:   3'- aaaGCG-CCGUUGGUGCa--CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 48022 0.67 0.754601
Target:  5'- --gCGUGGUuaGGCCGCGcUGCccgagcgGGGCGCGc -3'
miRNA:   3'- aaaGCGCCG--UUGGUGC-ACG-------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 48092 0.74 0.369777
Target:  5'- -cUCgGCGGCcGCCGCcgugcgccccGUGCGGGCGCu -3'
miRNA:   3'- aaAG-CGCCGuUGGUG----------CACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 48174 0.7 0.583915
Target:  5'- -aUCGCgaagguggccucGGCGucgaggguccgcGCCACGUGCGccGGCGCGa -3'
miRNA:   3'- aaAGCG------------CCGU------------UGGUGCACGU--CCGCGU- -5'
21382 3' -58 NC_004812.1 + 48607 0.67 0.745905
Target:  5'- --cCGCGGCcauccggacGACgCGCGUGCGGGaaCGCc -3'
miRNA:   3'- aaaGCGCCG---------UUG-GUGCACGUCC--GCGu -5'
21382 3' -58 NC_004812.1 + 49980 0.66 0.802025
Target:  5'- ---aGCGGCGACUcCGgugaGCuGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGuGCa---CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 50129 0.68 0.68618
Target:  5'- cUUCGCGGgGcucAUCGCGUGC--GCGCAg -3'
miRNA:   3'- aAAGCGCCgU---UGGUGCACGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 50329 0.69 0.64534
Target:  5'- --aCGUGGCccuGugCGCGaucgGCAGGCGCc -3'
miRNA:   3'- aaaGCGCCG---UugGUGCa---CGUCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.