miRNA display CGI


Results 141 - 160 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 51433 0.67 0.745905
Target:  5'- -cUCGCaGGCAcgcgGCCGCucGCAGGCGgGg -3'
miRNA:   3'- aaAGCG-CCGU----UGGUGcaCGUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 51624 0.69 0.644314
Target:  5'- --cCGCGGCGgcccgcgGCCGCGUGC--GCGCc -3'
miRNA:   3'- aaaGCGCCGU-------UGGUGCACGucCGCGu -5'
21382 3' -58 NC_004812.1 + 51636 0.7 0.557596
Target:  5'- --gCGCGGCAACaCACGUGgauguugacgucggcCGGGcCGCGg -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCAC---------------GUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 51788 0.68 0.68618
Target:  5'- cUUCGCGGuCGGuCgGCG-GUAGGUGCGg -3'
miRNA:   3'- aAAGCGCC-GUU-GgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 51899 0.67 0.726298
Target:  5'- --gCGUGGCGGCCACGcacgcccGCAuGGCgGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCa------CGU-CCG-CGU- -5'
21382 3' -58 NC_004812.1 + 53052 0.66 0.783841
Target:  5'- --aCGCGGCAgcugcACCGCcagGC-GGCGCu -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGca-CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 53261 0.7 0.543561
Target:  5'- --gUGuuGCGACCugGaGCAGGCGCGc -3'
miRNA:   3'- aaaGCgcCGUUGGugCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 53773 0.68 0.665815
Target:  5'- -gUUGCGcGUcGCCgGCGUGgAGGCGCGc -3'
miRNA:   3'- aaAGCGC-CGuUGG-UGCACgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 53853 0.69 0.604327
Target:  5'- --cCGCGGCGuagGCCGUGUGCucGGCGUg -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCACGu-CCGCGu -5'
21382 3' -58 NC_004812.1 + 54606 0.67 0.726298
Target:  5'- -cUCGCGGCGgcGCCGCGaGUc-GCGCGa -3'
miRNA:   3'- aaAGCGCCGU--UGGUGCaCGucCGCGU- -5'
21382 3' -58 NC_004812.1 + 55647 0.69 0.635082
Target:  5'- -cUCGCGGaCGuCCGCG-GCGGcGCGCc -3'
miRNA:   3'- aaAGCGCC-GUuGGUGCaCGUC-CGCGu -5'
21382 3' -58 NC_004812.1 + 55971 0.67 0.754601
Target:  5'- --gCGCGGCucgcGCCGcCGUGCGcgcgauccuggccGGCGCc -3'
miRNA:   3'- aaaGCGCCGu---UGGU-GCACGU-------------CCGCGu -5'
21382 3' -58 NC_004812.1 + 56074 0.66 0.77454
Target:  5'- gUUCGaCGGCGgccucGCCGCGcccgacGUGGGCGCc -3'
miRNA:   3'- aAAGC-GCCGU-----UGGUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 56234 0.68 0.68618
Target:  5'- -cUCGCGGCGcGCCGacuCGUccGCGGGgGCGc -3'
miRNA:   3'- aaAGCGCCGU-UGGU---GCA--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 56281 0.66 0.810889
Target:  5'- --cCGCGGCGgcccgcucgaggGCCugGUccagcacgcGCAGcGCGCGc -3'
miRNA:   3'- aaaGCGCCGU------------UGGugCA---------CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 56898 0.68 0.6963
Target:  5'- --gUGCGGcCAGCCcUGggcGCAGGCGCc -3'
miRNA:   3'- aaaGCGCC-GUUGGuGCa--CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 57114 0.68 0.665815
Target:  5'- --cCGCGGUcggccccgauGCCAUGUcugugggcGCGGGCGCAg -3'
miRNA:   3'- aaaGCGCCGu---------UGGUGCA--------CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 57531 0.68 0.6963
Target:  5'- --gCGgGGCuccGCCACGUGCGGGacCGUc -3'
miRNA:   3'- aaaGCgCCGu--UGGUGCACGUCC--GCGu -5'
21382 3' -58 NC_004812.1 + 57975 0.69 0.624822
Target:  5'- cUUCaCGGCGGCCACGaaCAcGGCGCu -3'
miRNA:   3'- aAAGcGCCGUUGGUGCacGU-CCGCGu -5'
21382 3' -58 NC_004812.1 + 59247 0.68 0.676015
Target:  5'- --cCGCGGCGagcuGCUugGcgGCGGuGCGCGg -3'
miRNA:   3'- aaaGCGCCGU----UGGugCa-CGUC-CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.