miRNA display CGI


Results 41 - 60 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 141755 0.68 0.68618
Target:  5'- -gUCGUcgGGCGGCCGCGggGC-GGCGUc -3'
miRNA:   3'- aaAGCG--CCGUUGGUGCa-CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 141708 0.68 0.706366
Target:  5'- --cCGCGGgGACUACGUGCGccuGGUGa- -3'
miRNA:   3'- aaaGCGCCgUUGGUGCACGU---CCGCgu -5'
21382 3' -58 NC_004812.1 + 140845 0.67 0.76511
Target:  5'- ---gGUGGCGaggaACgACGUgccGCAGGCGCGc -3'
miRNA:   3'- aaagCGCCGU----UGgUGCA---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 139755 0.66 0.818727
Target:  5'- -gUCGCGGUcccccgcGACCGCGcGCcuaaGGGCgGCGg -3'
miRNA:   3'- aaAGCGCCG-------UUGGUGCaCG----UCCG-CGU- -5'
21382 3' -58 NC_004812.1 + 139559 0.67 0.755562
Target:  5'- --cCGCGGCGGCCGgGacCgAGGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGGUgCacG-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 138703 0.66 0.81959
Target:  5'- -cUCGCgcccGGaCGACCGCGgcgcgGCGGGCccGCGg -3'
miRNA:   3'- aaAGCG----CC-GUUGGUGCa----CGUCCG--CGU- -5'
21382 3' -58 NC_004812.1 + 138302 0.69 0.604327
Target:  5'- -gUCGCGGCGGgCuCGgagGguGGCGCc -3'
miRNA:   3'- aaAGCGCCGUUgGuGCa--CguCCGCGu -5'
21382 3' -58 NC_004812.1 + 138261 0.7 0.552571
Target:  5'- --cCGCGGCGgccgcggucgcgcGCCGCGcccUGCGGGCGg- -3'
miRNA:   3'- aaaGCGCCGU-------------UGGUGC---ACGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 138113 0.69 0.623797
Target:  5'- -cUCGCGGCGGucgucugccugugUCugGgccccGCGGGCGCGg -3'
miRNA:   3'- aaAGCGCCGUU-------------GGugCa----CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 138046 0.67 0.755562
Target:  5'- ---gGCGGCGGCgGCGgaGCGGGCccGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCa-CGUCCG--CGU- -5'
21382 3' -58 NC_004812.1 + 137761 0.67 0.76511
Target:  5'- gUUUCGCaGUAccGCCACcggGCGGcGCGCAa -3'
miRNA:   3'- -AAAGCGcCGU--UGGUGca-CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 137190 0.68 0.68618
Target:  5'- --cUGCGGCcgcgcGGCCACGcGCAGGCcGUg -3'
miRNA:   3'- aaaGCGCCG-----UUGGUGCaCGUCCG-CGu -5'
21382 3' -58 NC_004812.1 + 136700 0.66 0.783841
Target:  5'- --gCGCGGUGGCgGCGgcGCGGGcCGCc -3'
miRNA:   3'- aaaGCGCCGUUGgUGCa-CGUCC-GCGu -5'
21382 3' -58 NC_004812.1 + 136380 0.75 0.316002
Target:  5'- -gUCcCGGCGGCCGCGcuagccguUGCGGGCGCc -3'
miRNA:   3'- aaAGcGCCGUUGGUGC--------ACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 136282 0.67 0.76511
Target:  5'- --cUGCGcGCGcCCGCGUGgGGGCGg- -3'
miRNA:   3'- aaaGCGC-CGUuGGUGCACgUCCGCgu -5'
21382 3' -58 NC_004812.1 + 135813 0.7 0.594107
Target:  5'- --gUGCGGCGGCCugGcGCAGcgccuGCGCu -3'
miRNA:   3'- aaaGCGCCGUUGGugCaCGUC-----CGCGu -5'
21382 3' -58 NC_004812.1 + 134815 0.66 0.802025
Target:  5'- --cCGuCGGguACCGCG-GCGaauGGCGCGc -3'
miRNA:   3'- aaaGC-GCCguUGGUGCaCGU---CCGCGU- -5'
21382 3' -58 NC_004812.1 + 133537 0.67 0.755562
Target:  5'- -gUCGCgugGGUGGCCACcaUGCGGGcCGCGg -3'
miRNA:   3'- aaAGCG---CCGUUGGUGc-ACGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 133234 0.66 0.783841
Target:  5'- -aUCGUGGCGACggaCACGgcgGCcGGgGCGg -3'
miRNA:   3'- aaAGCGCCGUUG---GUGCa--CGuCCgCGU- -5'
21382 3' -58 NC_004812.1 + 133033 0.69 0.628926
Target:  5'- --cCGCGGCGcGCCGCcccucccgcccacucGgggGCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGUG---------------Ca--CGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.