miRNA display CGI


Results 81 - 100 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 129151 0.67 0.740062
Target:  5'- --gCGCGGCGccgcCCGCGUcugcgucggccagcaGgGGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUu---GGUGCA---------------CgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 129092 0.78 0.210532
Target:  5'- ---gGCGGCGGCgGCGgGCGGGCGCGc -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 128998 0.7 0.594107
Target:  5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 128946 0.67 0.712375
Target:  5'- --aCGCGGCGccagccGCCGCGggggucgggcccgGCGGGCGg- -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCa------------CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 128858 0.67 0.764161
Target:  5'- -gUCGgucagcuCGGCGACgACGcGCGgGGCGCAg -3'
miRNA:   3'- aaAGC-------GCCGUUGgUGCaCGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 128736 0.68 0.68618
Target:  5'- --gCGCGGCGGCCGa----AGGCGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGUgcacgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 128679 0.67 0.759395
Target:  5'- -cUCGggguCGGCGACCugGcGCAuccaggcggcggcgcGGCGCAg -3'
miRNA:   3'- aaAGC----GCCGUUGGugCaCGU---------------CCGCGU- -5'
21382 3' -58 NC_004812.1 + 128397 0.68 0.68618
Target:  5'- ---gGCGGCGGCgGCGaGCAGGC-CGa -3'
miRNA:   3'- aaagCGCCGUUGgUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 128317 0.66 0.77454
Target:  5'- --aCGUGGCGGCgCGCGacgGCGGGCcCGu -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 128221 0.66 0.793006
Target:  5'- --aCGCGGCcggaGGCCagcACG-GCGcGGCGCAg -3'
miRNA:   3'- aaaGCGCCG----UUGG---UGCaCGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 128116 0.71 0.533608
Target:  5'- --gCGCGGUAgcgcacguuggcGCCGCGgccCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU------------UGGUGCac-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 128056 0.68 0.676015
Target:  5'- --gCGCGGCGguacucgcGCgGCG-GCAGGgGCAc -3'
miRNA:   3'- aaaGCGCCGU--------UGgUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 127998 0.7 0.563642
Target:  5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3'
miRNA:   3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 127925 0.74 0.345985
Target:  5'- --gCGCGGcCAGCCcccagcGCGcGCAGGCGCGg -3'
miRNA:   3'- aaaGCGCC-GUUGG------UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 127737 0.69 0.635082
Target:  5'- --cCGCGGcCAGCgCACGcGC-GGCGCGg -3'
miRNA:   3'- aaaGCGCC-GUUG-GUGCaCGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 127670 0.67 0.745905
Target:  5'- -cUCGCGGCGGcggccaccuCCACGgcgGC-GGCGUc -3'
miRNA:   3'- aaAGCGCCGUU---------GGUGCa--CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 126927 0.66 0.77454
Target:  5'- --cCGaCGGCGGCCGCGgGgAGGgGCc -3'
miRNA:   3'- aaaGC-GCCGUUGGUGCaCgUCCgCGu -5'
21382 3' -58 NC_004812.1 + 125423 0.68 0.676015
Target:  5'- --gCGCGGCcgGACgGCG-GCGGaGCGCGc -3'
miRNA:   3'- aaaGCGCCG--UUGgUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 125308 0.68 0.68618
Target:  5'- gUUCcuCGGCGAgCGCGUGUuccgaGGGCGCc -3'
miRNA:   3'- aAAGc-GCCGUUgGUGCACG-----UCCGCGu -5'
21382 3' -58 NC_004812.1 + 125258 0.71 0.532616
Target:  5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.