miRNA display CGI


Results 101 - 120 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 125212 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGugaguuCGggcaGCAGGCGCGu -3'
miRNA:   3'- aaaGCGCCGUUGGU------GCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 125076 0.78 0.215793
Target:  5'- -cUCGCGuGCAGaCCGCGUGCcuccGGGCGCu -3'
miRNA:   3'- aaAGCGC-CGUU-GGUGCACG----UCCGCGu -5'
21382 3' -58 NC_004812.1 + 124707 0.67 0.744933
Target:  5'- -cUCGUGGaguggcuCGACCGCGggugGgAGGCGCu -3'
miRNA:   3'- aaAGCGCC-------GUUGGUGCa---CgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 124225 0.69 0.604327
Target:  5'- --cCGCGGCGcACCugGcgGCGGGCcugGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGugCa-CGUCCG---CGU- -5'
21382 3' -58 NC_004812.1 + 123125 0.67 0.726298
Target:  5'- -gUCgGCGGCGGCgGCGUcGgAGGCGgGg -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCA-CgUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 122981 0.67 0.755562
Target:  5'- --gCGCaugGGCAGCCACGUcuucagGCAGGggaUGCAg -3'
miRNA:   3'- aaaGCG---CCGUUGGUGCA------CGUCC---GCGU- -5'
21382 3' -58 NC_004812.1 + 122905 0.68 0.674997
Target:  5'- -gUCGCGGUAgcggccgacgGCCGCGacgccggUGCccgAGGCGCGc -3'
miRNA:   3'- aaAGCGCCGU----------UGGUGC-------ACG---UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 122861 0.68 0.665815
Target:  5'- -gUCcuCGGCGucgcGCCGCGUGCGGGgGUc -3'
miRNA:   3'- aaAGc-GCCGU----UGGUGCACGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 122269 0.66 0.802025
Target:  5'- --cCaCGGgGACCACG-GgGGGCGCGg -3'
miRNA:   3'- aaaGcGCCgUUGGUGCaCgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 121890 0.66 0.810889
Target:  5'- -aUCgGCGGCuGCCG-GUGUacgAGGCGCu -3'
miRNA:   3'- aaAG-CGCCGuUGGUgCACG---UCCGCGu -5'
21382 3' -58 NC_004812.1 + 121852 0.79 0.181244
Target:  5'- --cCGCGGCGGCCGCG-GCGaccacGGCGCAg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCaCGU-----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 121309 0.67 0.745905
Target:  5'- --cCGCGGUGAUCGC--GCGGGUGCu -3'
miRNA:   3'- aaaGCGCCGUUGGUGcaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 121282 0.67 0.745905
Target:  5'- --aCGCGGCccggGGCCGCcucggGCAGGCGa- -3'
miRNA:   3'- aaaGCGCCG----UUGGUGca---CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 120367 0.67 0.745905
Target:  5'- --cCGCGGgGGCgCGCGgccGgGGGCGCGu -3'
miRNA:   3'- aaaGCGCCgUUG-GUGCa--CgUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 120251 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 120134 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 120077 0.68 0.655586
Target:  5'- --cCGCcGUGGCCACGgcgGCGGuGCGCAc -3'
miRNA:   3'- aaaGCGcCGUUGGUGCa--CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 119487 0.75 0.301761
Target:  5'- --cCGCGGCGGCCGac-GCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGUUGGUgcaCGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 119483 0.71 0.484928
Target:  5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 119397 0.68 0.6963
Target:  5'- --cCGgGGCcccCCGCGUGCccggGGGCGCc -3'
miRNA:   3'- aaaGCgCCGuu-GGUGCACG----UCCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.