miRNA display CGI


Results 121 - 140 of 414 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 118832 0.76 0.255832
Target:  5'- -cUCGUGGC--CCACGUGgAGGCGCu -3'
miRNA:   3'- aaAGCGCCGuuGGUGCACgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 118462 0.66 0.793006
Target:  5'- --gCGCGGUgcaGGCCACGU---GGCGCGu -3'
miRNA:   3'- aaaGCGCCG---UUGGUGCAcguCCGCGU- -5'
21382 3' -58 NC_004812.1 + 117924 0.7 0.553575
Target:  5'- --cCGCGGCcuacacGGCCGCGccGCAcGGCGCGc -3'
miRNA:   3'- aaaGCGCCG------UUGGUGCa-CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 117645 0.66 0.802025
Target:  5'- --gCGCGGCGGggUCGCGggccgGcCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGUU--GGUGCa----C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 117366 0.66 0.77454
Target:  5'- --gUGgGGCGGCCGCGcccgGCAG-CGCGg -3'
miRNA:   3'- aaaGCgCCGUUGGUGCa---CGUCcGCGU- -5'
21382 3' -58 NC_004812.1 + 115481 0.66 0.793006
Target:  5'- --gCGCGuGCGGCCGCGc-CGGGCgGCGg -3'
miRNA:   3'- aaaGCGC-CGUUGGUGCacGUCCG-CGU- -5'
21382 3' -58 NC_004812.1 + 114278 0.67 0.725309
Target:  5'- --cCGCGGCGccgacacACCccCGggcUGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGU-------UGGu-GC---ACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 113697 0.68 0.69529
Target:  5'- -aUCGCGGCGGCCAaggucacacagacUGUcCGuGGCGCGc -3'
miRNA:   3'- aaAGCGCCGUUGGU-------------GCAcGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 112989 0.68 0.68618
Target:  5'- -aUCGCGGC-GCCGCGgccgccgagGCagAGGaCGCAg -3'
miRNA:   3'- aaAGCGCCGuUGGUGCa--------CG--UCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 112790 0.78 0.195409
Target:  5'- --gCGCGGCGGCUcccccgucggGCGUGUGGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUUGG----------UGCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 112721 0.71 0.484928
Target:  5'- ---gGCGGcCGGCCGCG-GcCGGGCGCGa -3'
miRNA:   3'- aaagCGCC-GUUGGUGCaC-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 112640 0.68 0.665815
Target:  5'- -gUgGCGGUGGCCACGcacaccgaccUGCGGGaCGCc -3'
miRNA:   3'- aaAgCGCCGUUGGUGC----------ACGUCC-GCGu -5'
21382 3' -58 NC_004812.1 + 112326 0.68 0.706366
Target:  5'- ---gGCGGCuGGCCGCGgagGCGGucGCGCGc -3'
miRNA:   3'- aaagCGCCG-UUGGUGCa--CGUC--CGCGU- -5'
21382 3' -58 NC_004812.1 + 110487 0.66 0.799335
Target:  5'- cUUCGCGaaggucacggacgaGgGGCUgGCGUGCGGGCGCc -3'
miRNA:   3'- aAAGCGC--------------CgUUGG-UGCACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 109947 0.67 0.745905
Target:  5'- --gCGCGGCGcCCugGcgGCcguGGCGCu -3'
miRNA:   3'- aaaGCGCCGUuGGugCa-CGu--CCGCGu -5'
21382 3' -58 NC_004812.1 + 109715 0.81 0.136825
Target:  5'- --gCGCuGGCGGCCGCGcuggGCAGGCGCGa -3'
miRNA:   3'- aaaGCG-CCGUUGGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 109708 0.66 0.810889
Target:  5'- ---gGCGGCGGCCGcCGcGCccgaccccgGGGCGCu -3'
miRNA:   3'- aaagCGCCGUUGGU-GCaCG---------UCCGCGu -5'
21382 3' -58 NC_004812.1 + 108729 0.71 0.494503
Target:  5'- -cUCGUGGCGcgcuACUACcugcUGCAGGCGCu -3'
miRNA:   3'- aaAGCGCCGU----UGGUGc---ACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 108596 0.68 0.705362
Target:  5'- --gCGCGGCcuAACCACGcucuucgUGCaccacgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCG--UUGGUGC-------ACG------UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 108489 0.67 0.745905
Target:  5'- -gUCGCGGuCAACgGCGccaGCgcccgcacgGGGCGCAc -3'
miRNA:   3'- aaAGCGCC-GUUGgUGCa--CG---------UCCGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.