Results 61 - 80 of 414 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 25895 | 0.73 | 0.403199 |
Target: 5'- --cCGCGGCGcCCGCGcccagcgccGCGGGCGCGc -3' miRNA: 3'- aaaGCGCCGUuGGUGCa--------CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 4794 | 0.73 | 0.411848 |
Target: 5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3' miRNA: 3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 129215 | 0.72 | 0.475442 |
Target: 5'- -gUCgGCGGCGGCgGCGccgGCGGaGCGCAc -3' miRNA: 3'- aaAG-CGCCGUUGgUGCa--CGUC-CGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 131089 | 0.72 | 0.475442 |
Target: 5'- gUUCGCGGCGGCC-CGUcgGCGGGguccUGCGa -3' miRNA: 3'- aAAGCGCCGUUGGuGCA--CGUCC----GCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 152853 | 0.72 | 0.475442 |
Target: 5'- -gUCGcCGGCGccGCCGCGccgcUGCuGGCGCGc -3' miRNA: 3'- aaAGC-GCCGU--UGGUGC----ACGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 112721 | 0.71 | 0.484928 |
Target: 5'- ---gGCGGcCGGCCGCG-GcCGGGCGCGa -3' miRNA: 3'- aaagCGCC-GUUGGUGCaC-GUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 65761 | 0.71 | 0.484928 |
Target: 5'- --cCGCGGCGccggcuuCCGCGccGCGGGCGCc -3' miRNA: 3'- aaaGCGCCGUu------GGUGCa-CGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 94252 | 0.71 | 0.484928 |
Target: 5'- gUUCGCGcCGAcCCACGcgccGCGGGCGCGc -3' miRNA: 3'- aAAGCGCcGUU-GGUGCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 119483 | 0.71 | 0.484928 |
Target: 5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3' miRNA: 3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 68175 | 0.71 | 0.494503 |
Target: 5'- ---gGuCGGCGGCCGCGgGCGGGgGCGc -3' miRNA: 3'- aaagC-GCCGUUGGUGCaCGUCCgCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 25356 | 0.72 | 0.475442 |
Target: 5'- ---gGCGGCGACCACGggcucGCcGGCGUc -3' miRNA: 3'- aaagCGCCGUUGGUGCa----CGuCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 156452 | 0.72 | 0.46605 |
Target: 5'- --gCGCGGCgGGCCGCGgGCGcggcGGCGCGg -3' miRNA: 3'- aaaGCGCCG-UUGGUGCaCGU----CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 100481 | 0.73 | 0.411848 |
Target: 5'- --gCGCGGCcGCCcggaGCGcGCAGGCGUAc -3' miRNA: 3'- aaaGCGCCGuUGG----UGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 30406 | 0.73 | 0.41973 |
Target: 5'- --gCGCGGCGGCCuucaggcACGUGaaggucaGGGCGCGg -3' miRNA: 3'- aaaGCGCCGUUGG-------UGCACg------UCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 74905 | 0.73 | 0.420611 |
Target: 5'- --gCGCGuccaGGCgCGCGUGCAGGCGCGc -3' miRNA: 3'- aaaGCGCcg--UUG-GUGCACGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 7634 | 0.72 | 0.429486 |
Target: 5'- --gCGCGGCGGCCGgG-GUcgGGGCGCGa -3' miRNA: 3'- aaaGCGCCGUUGGUgCaCG--UCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 14862 | 0.72 | 0.43847 |
Target: 5'- --cCGCGGCcgcccgacgacGGCUggGUGCAGGUGCAc -3' miRNA: 3'- aaaGCGCCG-----------UUGGugCACGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 90318 | 0.72 | 0.447561 |
Target: 5'- --cCGCaGC-ACCGCGUacGCGGGCGCGg -3' miRNA: 3'- aaaGCGcCGuUGGUGCA--CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 66517 | 0.72 | 0.448476 |
Target: 5'- --gCGCGGCGaacacGCCGCGguaccgcucgcgcucGCAGGCGCu -3' miRNA: 3'- aaaGCGCCGU-----UGGUGCa--------------CGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 42 | 0.72 | 0.46605 |
Target: 5'- --gCGCGGCgGGCCGCGgGCGcggcGGCGCGg -3' miRNA: 3'- aaaGCGCCG-UUGGUGCaCGU----CCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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