miRNA display CGI


Results 101 - 120 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 74058 0.7 0.563642
Target:  5'- -cUCG-GGCGGCaGCG-GCGGGCGCGc -3'
miRNA:   3'- aaAGCgCCGUUGgUGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 101106 0.7 0.573758
Target:  5'- --aCGCGGCAcUCGCGgucgaGCAuGGCGCGc -3'
miRNA:   3'- aaaGCGCCGUuGGUGCa----CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 31991 0.7 0.583915
Target:  5'- --cCGCGGCAgguccGCCACGgagGCGGG-GCc -3'
miRNA:   3'- aaaGCGCCGU-----UGGUGCa--CGUCCgCGu -5'
21382 3' -58 NC_004812.1 + 44989 0.7 0.583915
Target:  5'- --cCGCGGCcacgAGCCAgGUGCcggAGGCGUu -3'
miRNA:   3'- aaaGCGCCG----UUGGUgCACG---UCCGCGu -5'
21382 3' -58 NC_004812.1 + 66305 0.7 0.583915
Target:  5'- -cUCGCGGCuGGCgGCGccCAGGCGCc -3'
miRNA:   3'- aaAGCGCCG-UUGgUGCacGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 131013 0.71 0.533608
Target:  5'- ---gGCGGCGGCCGCGgggaAGGCGUc -3'
miRNA:   3'- aaagCGCCGUUGGUGCacg-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 128116 0.71 0.533608
Target:  5'- --gCGCGGUAgcgcacguuggcGCCGCGgccCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU------------UGGUGCac-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 129215 0.72 0.475442
Target:  5'- -gUCgGCGGCGGCgGCGccgGCGGaGCGCAc -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCa--CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 131089 0.72 0.475442
Target:  5'- gUUCGCGGCGGCC-CGUcgGCGGGguccUGCGa -3'
miRNA:   3'- aAAGCGCCGUUGGuGCA--CGUCC----GCGU- -5'
21382 3' -58 NC_004812.1 + 152853 0.72 0.475442
Target:  5'- -gUCGcCGGCGccGCCGCGccgcUGCuGGCGCGc -3'
miRNA:   3'- aaAGC-GCCGU--UGGUGC----ACGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 112721 0.71 0.484928
Target:  5'- ---gGCGGcCGGCCGCG-GcCGGGCGCGa -3'
miRNA:   3'- aaagCGCC-GUUGGUGCaC-GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 65761 0.71 0.484928
Target:  5'- --cCGCGGCGccggcuuCCGCGccGCGGGCGCc -3'
miRNA:   3'- aaaGCGCCGUu------GGUGCa-CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 94252 0.71 0.484928
Target:  5'- gUUCGCGcCGAcCCACGcgccGCGGGCGCGc -3'
miRNA:   3'- aAAGCGCcGUU-GGUGCa---CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 119483 0.71 0.484928
Target:  5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 68175 0.71 0.494503
Target:  5'- ---gGuCGGCGGCCGCGgGCGGGgGCGc -3'
miRNA:   3'- aaagC-GCCGUUGGUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 108729 0.71 0.494503
Target:  5'- -cUCGUGGCGcgcuACUACcugcUGCAGGCGCu -3'
miRNA:   3'- aaAGCGCCGU----UGGUGc---ACGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 40018 0.71 0.504163
Target:  5'- --aCGCGGCGGcCCGCG-GCGGGC-CGg -3'
miRNA:   3'- aaaGCGCCGUU-GGUGCaCGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 13575 0.71 0.513903
Target:  5'- -cUCGCGcGCcACCuugagguggGCGUGCAGGCGg- -3'
miRNA:   3'- aaAGCGC-CGuUGG---------UGCACGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 94326 0.71 0.52372
Target:  5'- --gCGCGGCGgugACCGCGUgggucuccgcGCGcGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCA----------CGU-CCGCGU- -5'
21382 3' -58 NC_004812.1 + 125258 0.71 0.532616
Target:  5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.