Results 141 - 160 of 414 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 128998 | 0.7 | 0.594107 |
Target: 5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3' miRNA: 3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 62895 | 0.7 | 0.594107 |
Target: 5'- --gCGCGuGCccuacuACCGCGUGCAcGCGCGg -3' miRNA: 3'- aaaGCGC-CGu-----UGGUGCACGUcCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 131561 | 0.7 | 0.553575 |
Target: 5'- --gCGCGGCuaucgacACCGC--GCAGGCGCGg -3' miRNA: 3'- aaaGCGCCGu------UGGUGcaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 96746 | 0.7 | 0.543561 |
Target: 5'- --gCGuCGGCGuCUACGUGCGGcGCGCc -3' miRNA: 3'- aaaGC-GCCGUuGGUGCACGUC-CGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 18359 | 0.7 | 0.543561 |
Target: 5'- --cCGCGGCcGCCGCGgcguacGCGGGCccGCGg -3' miRNA: 3'- aaaGCGCCGuUGGUGCa-----CGUCCG--CGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 131013 | 0.71 | 0.533608 |
Target: 5'- ---gGCGGCGGCCGCGgggaAGGCGUc -3' miRNA: 3'- aaagCGCCGUUGGUGCacg-UCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 128116 | 0.71 | 0.533608 |
Target: 5'- --gCGCGGUAgcgcacguuggcGCCGCGgccCAGGCGCGg -3' miRNA: 3'- aaaGCGCCGU------------UGGUGCac-GUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 125258 | 0.71 | 0.532616 |
Target: 5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3' miRNA: 3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 94326 | 0.71 | 0.52372 |
Target: 5'- --gCGCGGCGgugACCGCGUgggucuccgcGCGcGGCGCGg -3' miRNA: 3'- aaaGCGCCGU---UGGUGCA----------CGU-CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 13575 | 0.71 | 0.513903 |
Target: 5'- -cUCGCGcGCcACCuugagguggGCGUGCAGGCGg- -3' miRNA: 3'- aaAGCGC-CGuUGG---------UGCACGUCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 73219 | 0.7 | 0.553575 |
Target: 5'- -cUCGCGGCcGCCcuGCGggucggGCGGGCGg- -3' miRNA: 3'- aaAGCGCCGuUGG--UGCa-----CGUCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 117924 | 0.7 | 0.553575 |
Target: 5'- --cCGCGGCcuacacGGCCGCGccGCAcGGCGCGc -3' miRNA: 3'- aaaGCGCCG------UUGGUGCa-CGU-CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 66305 | 0.7 | 0.583915 |
Target: 5'- -cUCGCGGCuGGCgGCGccCAGGCGCc -3' miRNA: 3'- aaAGCGCCG-UUGgUGCacGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 44989 | 0.7 | 0.583915 |
Target: 5'- --cCGCGGCcacgAGCCAgGUGCcggAGGCGUu -3' miRNA: 3'- aaaGCGCCG----UUGGUgCACG---UCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 31991 | 0.7 | 0.583915 |
Target: 5'- --cCGCGGCAgguccGCCACGgagGCGGG-GCc -3' miRNA: 3'- aaaGCGCCGU-----UGGUGCa--CGUCCgCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 101106 | 0.7 | 0.573758 |
Target: 5'- --aCGCGGCAcUCGCGgucgaGCAuGGCGCGc -3' miRNA: 3'- aaaGCGCCGUuGGUGCa----CGU-CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 74058 | 0.7 | 0.563642 |
Target: 5'- -cUCG-GGCGGCaGCG-GCGGGCGCGc -3' miRNA: 3'- aaAGCgCCGUUGgUGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 127998 | 0.7 | 0.563642 |
Target: 5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3' miRNA: 3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 20029 | 0.7 | 0.562633 |
Target: 5'- -gUCGCGGCAaaacagguagagcAgCACGUGgAGGCGg- -3' miRNA: 3'- aaAGCGCCGU-------------UgGUGCACgUCCGCgu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 51636 | 0.7 | 0.557596 |
Target: 5'- --gCGCGGCAACaCACGUGgauguugacgucggcCGGGcCGCGg -3' miRNA: 3'- aaaGCGCCGUUG-GUGCAC---------------GUCC-GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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