Results 41 - 60 of 414 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 83207 | 0.71 | 0.52372 |
Target: 5'- --gCGCGGCGGCCGCGcuCGGGgGCc -3' miRNA: 3'- aaaGCGCCGUUGGUGCacGUCCgCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 4564 | 0.74 | 0.369777 |
Target: 5'- -cUCGCGGuCGGgCGCGaagaGCAGGCGCGu -3' miRNA: 3'- aaAGCGCC-GUUgGUGCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 152753 | 0.79 | 0.181244 |
Target: 5'- --cCGCGGCGGCCGCG-GCGaccacGGCGCAg -3' miRNA: 3'- aaaGCGCCGUUGGUGCaCGU-----CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 107194 | 0.71 | 0.504163 |
Target: 5'- --aCGCGGCGGCC-CGggGCcacGGCGCGg -3' miRNA: 3'- aaaGCGCCGUUGGuGCa-CGu--CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 109715 | 0.81 | 0.136825 |
Target: 5'- --gCGCuGGCGGCCGCGcuggGCAGGCGCGa -3' miRNA: 3'- aaaGCG-CCGUUGGUGCa---CGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 4888 | 0.69 | 0.604327 |
Target: 5'- -gUCGCGccCGGCCACG-GCGGcGCGCGc -3' miRNA: 3'- aaAGCGCc-GUUGGUGCaCGUC-CGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 3584 | 0.78 | 0.210532 |
Target: 5'- ---gGCGGCGGCgGCGgGCGGGCGCGc -3' miRNA: 3'- aaagCGCCGUUGgUGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 15003 | 0.69 | 0.604327 |
Target: 5'- --gCGCGGCAgGuuGCGgacgggGCAGGCGCc -3' miRNA: 3'- aaaGCGCCGU-UggUGCa-----CGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 3490 | 0.7 | 0.594107 |
Target: 5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3' miRNA: 3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 15966 | 0.7 | 0.563642 |
Target: 5'- --gCGUGGCGccGCCGCGcgGC-GGCGCGu -3' miRNA: 3'- aaaGCGCCGU--UGGUGCa-CGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 92003 | 0.7 | 0.553575 |
Target: 5'- ---gGUGGCcGCgACGUGCAGGCaggGCAg -3' miRNA: 3'- aaagCGCCGuUGgUGCACGUCCG---CGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 53261 | 0.7 | 0.543561 |
Target: 5'- --gUGuuGCGACCugGaGCAGGCGCGc -3' miRNA: 3'- aaaGCgcCGUUGGugCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 156159 | 0.71 | 0.532616 |
Target: 5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3' miRNA: 3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 27345 | 0.72 | 0.475442 |
Target: 5'- -gUCGcCGGCGccGCCGCGccgcUGCuGGCGCGc -3' miRNA: 3'- aaAGC-GCCGU--UGGUGC----ACGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 30943 | 0.72 | 0.46605 |
Target: 5'- --gCGCGGCgGGCCGCGggcGCGgcGGCGCGg -3' miRNA: 3'- aaaGCGCCG-UUGGUGCa--CGU--CCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 89227 | 0.73 | 0.389602 |
Target: 5'- --gCGCGGCGgcggaggcccgcgccGCCACGgugucGCAGGCGUg -3' miRNA: 3'- aaaGCGCCGU---------------UGGUGCa----CGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 100795 | 0.74 | 0.369777 |
Target: 5'- --aCGagaGGCGcugcGCCGCGUGCuGGCGCGu -3' miRNA: 3'- aaaGCg--CCGU----UGGUGCACGuCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 47289 | 0.75 | 0.313113 |
Target: 5'- --gCGCGGCGccgccuccagcgccGCCggcgcguACGUGCGGGCGCGc -3' miRNA: 3'- aaaGCGCCGU--------------UGG-------UGCACGUCCGCGU- -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 119487 | 0.75 | 0.301761 |
Target: 5'- --cCGCGGCGGCCGac-GCGGGCGCc -3' miRNA: 3'- aaaGCGCCGUUGGUgcaCGUCCGCGu -5' |
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21382 | 3' | -58 | NC_004812.1 | + | 18434 | 0.77 | 0.249759 |
Target: 5'- --gCGCGGCGgggGCCGCGUccGguGGCGCGg -3' miRNA: 3'- aaaGCGCCGU---UGGUGCA--CguCCGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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