miRNA display CGI


Results 61 - 80 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 156159 0.71 0.532616
Target:  5'- --gCGcCGGCGGCCcgggcucGCG-GCGGGCGCGc -3'
miRNA:   3'- aaaGC-GCCGUUGG-------UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 138261 0.7 0.552571
Target:  5'- --cCGCGGCGgccgcggucgcgcGCCGCGcccUGCGGGCGg- -3'
miRNA:   3'- aaaGCGCCGU-------------UGGUGC---ACGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 125076 0.78 0.215793
Target:  5'- -cUCGCGuGCAGaCCGCGUGCcuccGGGCGCu -3'
miRNA:   3'- aaAGCGC-CGUU-GGUGCACG----UCCGCGu -5'
21382 3' -58 NC_004812.1 + 118832 0.76 0.255832
Target:  5'- -cUCGUGGC--CCACGUGgAGGCGCu -3'
miRNA:   3'- aaAGCGCCGuuGGUGCACgUCCGCGu -5'
21382 3' -58 NC_004812.1 + 38182 0.75 0.308819
Target:  5'- ---gGCGGCGGCCGCGUGUgAGGcCGCc -3'
miRNA:   3'- aaagCGCCGUUGGUGCACG-UCC-GCGu -5'
21382 3' -58 NC_004812.1 + 146060 0.75 0.316002
Target:  5'- -gUCGCGGC-GCUACGUGgaccagucgaCGGGCGCGa -3'
miRNA:   3'- aaAGCGCCGuUGGUGCAC----------GUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 87055 0.73 0.386249
Target:  5'- --gCGCGGCcggcGCCGCGgGCAGGgGCGc -3'
miRNA:   3'- aaaGCGCCGu---UGGUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 35695 0.73 0.411848
Target:  5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3'
miRNA:   3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3707 0.72 0.475442
Target:  5'- -gUCgGCGGCGGCgGCGccgGCGGaGCGCAc -3'
miRNA:   3'- aaAG-CGCCGUUGgUGCa--CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 150384 0.71 0.484928
Target:  5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 120077 0.68 0.655586
Target:  5'- --cCGCcGUGGCCACGgcgGCGGuGCGCAc -3'
miRNA:   3'- aaaGCGcCGUUGGUGCa--CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 35255 0.68 0.655586
Target:  5'- -cUCGUGG-GGCgCGCGUGCAacauGGCGCGc -3'
miRNA:   3'- aaAGCGCCgUUG-GUGCACGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 2490 0.7 0.563642
Target:  5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3'
miRNA:   3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 47601 0.7 0.583915
Target:  5'- --gCGCaGGCAGCCGCGgucGUGGGCGa- -3'
miRNA:   3'- aaaGCG-CCGUUGGUGCa--CGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 15003 0.69 0.604327
Target:  5'- --gCGCGGCAgGuuGCGgacgggGCAGGCGCc -3'
miRNA:   3'- aaaGCGCCGU-UggUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 4888 0.69 0.604327
Target:  5'- -gUCGCGccCGGCCACG-GCGGcGCGCGc -3'
miRNA:   3'- aaAGCGCc-GUUGGUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 27668 0.69 0.614568
Target:  5'- --cCGCGGCGgcuggcGCCGCGUGCcgccgGGGCcCAg -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCACG-----UCCGcGU- -5'
21382 3' -58 NC_004812.1 + 151035 0.69 0.624822
Target:  5'- --cCGUGGC--CCugGUggGCGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGuuGGugCA--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3831 0.69 0.64534
Target:  5'- --aCGCGGagguCCcCGcGCAGGCGCAu -3'
miRNA:   3'- aaaGCGCCguu-GGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 34768 0.69 0.64534
Target:  5'- --cCGCGGCcGCCGCGgcccGCAaGCGCc -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa---CGUcCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.