Results 81 - 100 of 414 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21382 | 3' | -58 | NC_004812.1 | + | 77100 | 0.7 | 0.572744 |
Target: 5'- --gCGCGGCGAUgACGUugcccccGCGGGgGCGg -3' miRNA: 3'- aaaGCGCCGUUGgUGCA-------CGUCCgCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 100335 | 0.7 | 0.594107 |
Target: 5'- -cUCGagcgGGCcGCCGCGgGCgAGGCGCAg -3' miRNA: 3'- aaAGCg---CCGuUGGUGCaCG-UCCGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 3916 | 0.69 | 0.604327 |
Target: 5'- --gCGCGGCGgcgggGCCGCGcggcggcgGCAcGGCGCGc -3' miRNA: 3'- aaaGCGCCGU-----UGGUGCa-------CGU-CCGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 138302 | 0.69 | 0.604327 |
Target: 5'- -gUCGCGGCGGgCuCGgagGguGGCGCc -3' miRNA: 3'- aaAGCGCCGUUgGuGCa--CguCCGCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 80256 | 0.69 | 0.624822 |
Target: 5'- ---gGCGGCGGCCGCGgaccugGCGguggcGGUGCGg -3' miRNA: 3'- aaagCGCCGUUGGUGCa-----CGU-----CCGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 3831 | 0.69 | 0.64534 |
Target: 5'- --aCGCGGagguCCcCGcGCAGGCGCAu -3' miRNA: 3'- aaaGCGCCguu-GGuGCaCGUCCGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 34768 | 0.69 | 0.64534 |
Target: 5'- --cCGCGGCcGCCGCGgcccGCAaGCGCc -3' miRNA: 3'- aaaGCGCCGuUGGUGCa---CGUcCGCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 150384 | 0.71 | 0.484928 |
Target: 5'- --cCGCGG-GGCCGCGgcgGCAGGgGCGg -3' miRNA: 3'- aaaGCGCCgUUGGUGCa--CGUCCgCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 3707 | 0.72 | 0.475442 |
Target: 5'- -gUCgGCGGCGGCgGCGccgGCGGaGCGCAc -3' miRNA: 3'- aaAG-CGCCGUUGgUGCa--CGUC-CGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 35695 | 0.73 | 0.411848 |
Target: 5'- --gCGgGGCGAgggCugGUGCGGGCGCGg -3' miRNA: 3'- aaaGCgCCGUUg--GugCACGUCCGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 153762 | 0.68 | 0.665815 |
Target: 5'- -gUCcuCGGCGucgcGCCGCGUGCGGGgGUc -3' miRNA: 3'- aaAGc-GCCGU----UGGUGCACGUCCgCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 156324 | 0.68 | 0.676015 |
Target: 5'- --gCGCGGCcgGACgGCG-GCGGaGCGCGc -3' miRNA: 3'- aaaGCGCCG--UUGgUGCaCGUC-CGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 4237 | 0.68 | 0.68618 |
Target: 5'- ---gGCGGCGGCgGCGgcgGCGgcGGCGCc -3' miRNA: 3'- aaagCGCCGUUGgUGCa--CGU--CCGCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 141755 | 0.68 | 0.68618 |
Target: 5'- -gUCGUcgGGCGGCCGCGggGC-GGCGUc -3' miRNA: 3'- aaAGCG--CCGUUGGUGCa-CGuCCGCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 26841 | 0.68 | 0.6963 |
Target: 5'- --gCGCGagaacGCcGCCGCG-GCGGGCGCc -3' miRNA: 3'- aaaGCGC-----CGuUGGUGCaCGUCCGCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 125076 | 0.78 | 0.215793 |
Target: 5'- -cUCGCGuGCAGaCCGCGUGCcuccGGGCGCu -3' miRNA: 3'- aaAGCGC-CGUU-GGUGCACG----UCCGCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 118832 | 0.76 | 0.255832 |
Target: 5'- -cUCGUGGC--CCACGUGgAGGCGCu -3' miRNA: 3'- aaAGCGCCGuuGGUGCACgUCCGCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 38182 | 0.75 | 0.308819 |
Target: 5'- ---gGCGGCGGCCGCGUGUgAGGcCGCc -3' miRNA: 3'- aaagCGCCGUUGGUGCACG-UCC-GCGu -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 146060 | 0.75 | 0.316002 |
Target: 5'- -gUCGCGGC-GCUACGUGgaccagucgaCGGGCGCGa -3' miRNA: 3'- aaAGCGCCGuUGGUGCAC----------GUCCGCGU- -5' |
|||||||
21382 | 3' | -58 | NC_004812.1 | + | 87055 | 0.73 | 0.386249 |
Target: 5'- --gCGCGGCcggcGCCGCGgGCAGGgGCGc -3' miRNA: 3'- aaaGCGCCGu---UGGUGCaCGUCCgCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home