miRNA display CGI


Results 121 - 140 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 60864 0.73 0.386249
Target:  5'- --gCGCGGCcGCCGCGagcgccagaucUGCAGGCGgAa -3'
miRNA:   3'- aaaGCGCCGuUGGUGC-----------ACGUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 38535 0.72 0.429486
Target:  5'- --gCGCGGCGGCCGgG-GUcgGGGCGCGa -3'
miRNA:   3'- aaaGCGCCGUUGGUgCaCG--UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 112326 0.68 0.706366
Target:  5'- ---gGCGGCuGGCCGCGgagGCGGucGCGCGc -3'
miRNA:   3'- aaagCGCCG-UUGGUGCa--CGUC--CGCGU- -5'
21382 3' -58 NC_004812.1 + 150298 0.68 0.6963
Target:  5'- --cCGgGGCcccCCGCGUGCccggGGGCGCc -3'
miRNA:   3'- aaaGCgCCGuu-GGUGCACG----UCCGCGu -5'
21382 3' -58 NC_004812.1 + 57531 0.68 0.6963
Target:  5'- --gCGgGGCuccGCCACGUGCGGGacCGUc -3'
miRNA:   3'- aaaGCgCCGu--UGGUGCACGUCC--GCGu -5'
21382 3' -58 NC_004812.1 + 5505 0.71 0.533608
Target:  5'- ---gGCGGCGGCCGCGgggaAGGCGUc -3'
miRNA:   3'- aaagCGCCGUUGGUGCacg-UCCGCGu -5'
21382 3' -58 NC_004812.1 + 6052 0.7 0.553575
Target:  5'- --gCGCGGCuaucgacACCGC--GCAGGCGCGg -3'
miRNA:   3'- aaaGCGCCGu------UGGUGcaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 2490 0.7 0.563642
Target:  5'- ---gGCGGCGGCCucGCGgGCGGGCGa- -3'
miRNA:   3'- aaagCGCCGUUGG--UGCaCGUCCGCgu -5'
21382 3' -58 NC_004812.1 + 3490 0.7 0.594107
Target:  5'- --gCGCGGCgGGCCGCGggcGCGGGCcCGg -3'
miRNA:   3'- aaaGCGCCG-UUGGUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 15003 0.69 0.604327
Target:  5'- --gCGCGGCAgGuuGCGgacgggGCAGGCGCc -3'
miRNA:   3'- aaaGCGCCGU-UggUGCa-----CGUCCGCGu -5'
21382 3' -58 NC_004812.1 + 124225 0.69 0.604327
Target:  5'- --cCGCGGCGcACCugGcgGCGGGCcugGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGugCa-CGUCCG---CGU- -5'
21382 3' -58 NC_004812.1 + 27668 0.69 0.614568
Target:  5'- --cCGCGGCGgcuggcGCCGCGUGCcgccgGGGCcCAg -3'
miRNA:   3'- aaaGCGCCGU------UGGUGCACG-----UCCGcGU- -5'
21382 3' -58 NC_004812.1 + 7525 0.69 0.628926
Target:  5'- --cCGCGGCGcGCCGCcccucccgcccacucGgggGCGGGCGCGg -3'
miRNA:   3'- aaaGCGCCGU-UGGUG---------------Ca--CGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3831 0.69 0.64534
Target:  5'- --aCGCGGagguCCcCGcGCAGGCGCAu -3'
miRNA:   3'- aaaGCGCCguu-GGuGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 14531 0.68 0.655586
Target:  5'- ---gGCGGCAgcuggGCCGCGaccGCGGGgGCGg -3'
miRNA:   3'- aaagCGCCGU-----UGGUGCa--CGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 35255 0.68 0.655586
Target:  5'- -cUCGUGG-GGCgCGCGUGCAacauGGCGCGc -3'
miRNA:   3'- aaAGCGCCgUUG-GUGCACGU----CCGCGU- -5'
21382 3' -58 NC_004812.1 + 44235 0.68 0.665815
Target:  5'- --gUGUGGCcGCCGCGaguccgGCAGaGCGCGa -3'
miRNA:   3'- aaaGCGCCGuUGGUGCa-----CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 2548 0.68 0.676015
Target:  5'- --gCGCGGCGguacucgcGCgGCG-GCAGGgGCAc -3'
miRNA:   3'- aaaGCGCCGU--------UGgUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 59247 0.68 0.676015
Target:  5'- --cCGCGGCGagcuGCUugGcgGCGGuGCGCGg -3'
miRNA:   3'- aaaGCGCCGU----UGGugCa-CGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 137190 0.68 0.68618
Target:  5'- --cUGCGGCcgcgcGGCCACGcGCAGGCcGUg -3'
miRNA:   3'- aaaGCGCCG-----UUGGUGCaCGUCCG-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.