miRNA display CGI


Results 141 - 160 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 3' -58 NC_004812.1 + 2809 0.66 0.77454
Target:  5'- --aCGUGGCGGCgCGCGacgGCGGGCcCGu -3'
miRNA:   3'- aaaGCGCCGUUG-GUGCa--CGUCCGcGU- -5'
21382 3' -58 NC_004812.1 + 28492 0.67 0.76511
Target:  5'- --cCGCGGC-GCCaACGUGCGcuaccGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGG-UGCACGUc----CGCGU- -5'
21382 3' -58 NC_004812.1 + 7467 0.68 0.706366
Target:  5'- --cCGCGGgGACCGCGcgccccgGCGGccGCGCGg -3'
miRNA:   3'- aaaGCGCCgUUGGUGCa------CGUC--CGCGU- -5'
21382 3' -58 NC_004812.1 + 37243 0.68 0.706366
Target:  5'- ---aGgGGCAGCaggggGCG-GCAGGCGCGc -3'
miRNA:   3'- aaagCgCCGUUGg----UGCaCGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 141755 0.68 0.68618
Target:  5'- -gUCGUcgGGCGGCCGCGggGC-GGCGUc -3'
miRNA:   3'- aaAGCG--CCGUUGGUGCa-CGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 137190 0.68 0.68618
Target:  5'- --cUGCGGCcgcgcGGCCACGcGCAGGCcGUg -3'
miRNA:   3'- aaaGCGCCG-----UUGGUGCaCGUCCG-CGu -5'
21382 3' -58 NC_004812.1 + 156324 0.68 0.676015
Target:  5'- --gCGCGGCcgGACgGCG-GCGGaGCGCGc -3'
miRNA:   3'- aaaGCGCCG--UUGgUGCaCGUC-CGCGU- -5'
21382 3' -58 NC_004812.1 + 2548 0.68 0.676015
Target:  5'- --gCGCGGCGguacucgcGCgGCG-GCAGGgGCAc -3'
miRNA:   3'- aaaGCGCCGU--------UGgUGCaCGUCCgCGU- -5'
21382 3' -58 NC_004812.1 + 17478 0.68 0.665815
Target:  5'- --cCGCGGCGgauGCCGCG-GU-GGCGCu -3'
miRNA:   3'- aaaGCGCCGU---UGGUGCaCGuCCGCGu -5'
21382 3' -58 NC_004812.1 + 71458 0.68 0.655586
Target:  5'- --aCuCGGCGAgCGCGUcCAGGCGCGc -3'
miRNA:   3'- aaaGcGCCGUUgGUGCAcGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 17956 0.67 0.716368
Target:  5'- -gUCGCccgGGCGACgGCGgccGuCAGGCGCc -3'
miRNA:   3'- aaAGCG---CCGUUGgUGCa--C-GUCCGCGu -5'
21382 3' -58 NC_004812.1 + 51899 0.67 0.726298
Target:  5'- --gCGUGGCGGCCACGcacgcccGCAuGGCgGCGg -3'
miRNA:   3'- aaaGCGCCGUUGGUGCa------CGU-CCG-CGU- -5'
21382 3' -58 NC_004812.1 + 46138 0.67 0.764161
Target:  5'- cUUCGCgaaguacGGCAGCCGCaggcuGUGUccguGGGCGUAc -3'
miRNA:   3'- aAAGCG-------CCGUUGGUG-----CACG----UCCGCGU- -5'
21382 3' -58 NC_004812.1 + 3170 0.67 0.759395
Target:  5'- -cUCGggguCGGCGACCugGcGCAuccaggcggcggcgcGGCGCAg -3'
miRNA:   3'- aaAGC----GCCGUUGGugCaCGU---------------CCGCGU- -5'
21382 3' -58 NC_004812.1 + 133537 0.67 0.755562
Target:  5'- -gUCGCgugGGUGGCCACcaUGCGGGcCGCGg -3'
miRNA:   3'- aaAGCG---CCGUUGGUGc-ACGUCC-GCGU- -5'
21382 3' -58 NC_004812.1 + 55971 0.67 0.754601
Target:  5'- --gCGCGGCucgcGCCGcCGUGCGcgcgauccuggccGGCGCc -3'
miRNA:   3'- aaaGCGCCGu---UGGU-GCACGU-------------CCGCGu -5'
21382 3' -58 NC_004812.1 + 51433 0.67 0.745905
Target:  5'- -cUCGCaGGCAcgcgGCCGCucGCAGGCGgGg -3'
miRNA:   3'- aaAGCG-CCGU----UGGUGcaCGUCCGCgU- -5'
21382 3' -58 NC_004812.1 + 2228 0.67 0.745905
Target:  5'- --cCGCGGCccAGCgCACGcGC-GGCGCGg -3'
miRNA:   3'- aaaGCGCCG--UUG-GUGCaCGuCCGCGU- -5'
21382 3' -58 NC_004812.1 + 107094 0.67 0.735166
Target:  5'- -cUCGCcgacgggGGuCGugUugGUGCGGGUGCGg -3'
miRNA:   3'- aaAGCG-------CC-GUugGugCACGUCCGCGU- -5'
21382 3' -58 NC_004812.1 + 30345 0.67 0.726298
Target:  5'- --cCGCGGC-GCCGgGagGCgAGGCGCGc -3'
miRNA:   3'- aaaGCGCCGuUGGUgCa-CG-UCCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.