miRNA display CGI


Results 61 - 80 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 154666 0.66 0.723958
Target:  5'- uGCACCCgUccccccgacgggcggACGCCCcGGCCGG-AGCc -3'
miRNA:   3'- uCGUGGGgA---------------UGUGGGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 80767 0.66 0.720024
Target:  5'- --aACCCCUACACCCccgagaaCCAGCAc- -3'
miRNA:   3'- ucgUGGGGAUGUGGGacc----GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 98937 0.66 0.762515
Target:  5'- cGGCGCCCggaagAgACCCggGGCCgcggacgaccuguuuGGCGACg -3'
miRNA:   3'- -UCGUGGGga---UgUGGGa-CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150320 0.66 0.710139
Target:  5'- gGGCGCCgCUcC-CCCUGGCCGuGCc-- -3'
miRNA:   3'- -UCGUGGgGAuGuGGGACCGGU-CGuug -5'
21382 5' -59.3 NC_004812.1 + 133045 0.66 0.720024
Target:  5'- uAGCGCUCCgcgguCACgCCgacgauGCCGGCGGCg -3'
miRNA:   3'- -UCGUGGGGau---GUG-GGac----CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112250 0.66 0.720024
Target:  5'- uGCGCCCCgggcACGCCCUuuGCCcGCGc- -3'
miRNA:   3'- uCGUGGGGa---UGUGGGAc-CGGuCGUug -5'
21382 5' -59.3 NC_004812.1 + 92563 0.66 0.710139
Target:  5'- cGGCACggCCCgugGCcgucguCgCCUGGCUGGCGGCg -3'
miRNA:   3'- -UCGUG--GGGa--UGu-----G-GGACCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 52213 0.66 0.758732
Target:  5'- uGCGCUCCauggccgACACCagGGCCAuGUAGCg -3'
miRNA:   3'- uCGUGGGGa------UGUGGgaCCGGU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 121256 0.66 0.720024
Target:  5'- gGGCgucGCCCCggACACCCUgGGUCuGCu-- -3'
miRNA:   3'- -UCG---UGGGGa-UGUGGGA-CCGGuCGuug -5'
21382 5' -59.3 NC_004812.1 + 70983 0.66 0.720024
Target:  5'- gAGCACCgCgGgGCCCgcgGGUCGGCcGCc -3'
miRNA:   3'- -UCGUGGgGaUgUGGGa--CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 129237 0.66 0.758732
Target:  5'- gAGCGCaCCUgGCGCgggCCgcgcGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGaUGUG---GGac--CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 19256 0.66 0.739563
Target:  5'- uGGCGCCCagcaGCugCCgGGCgAGCGc- -3'
miRNA:   3'- -UCGUGGGga--UGugGGaCCGgUCGUug -5'
21382 5' -59.3 NC_004812.1 + 130251 0.66 0.759679
Target:  5'- cGCGCCCCgggggcggcggcucgGCGCCg-GGCCA-CGGCu -3'
miRNA:   3'- uCGUGGGGa--------------UGUGGgaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 58252 0.66 0.746318
Target:  5'- cGUACCUg-GCGCCCUacgacgaggacgacGGCCGGuCGGCg -3'
miRNA:   3'- uCGUGGGgaUGUGGGA--------------CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 3646 0.66 0.739563
Target:  5'- cGGCGCCgCCcGCGUCUgcgucGGCCAGCAGg -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa----CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 29811 0.66 0.729835
Target:  5'- cGGCGCCCCgccuccggGgACCCUgggGGCCGGa--- -3'
miRNA:   3'- -UCGUGGGGa-------UgUGGGA---CCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 68007 0.66 0.747279
Target:  5'- cGCGCCCCgugaaaGCACagggcguugcuggUCUGcaucgccGCCAGCAGCa -3'
miRNA:   3'- uCGUGGGGa-----UGUG-------------GGAC-------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 103064 0.66 0.758732
Target:  5'- gAGCACCUCgGCGCCCUcGGauCCGG-AGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGA-CC--GGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 125007 0.66 0.749198
Target:  5'- aGGCGCCCCUGCGC---GGCgC-GCGGCc -3'
miRNA:   3'- -UCGUGGGGAUGUGggaCCG-GuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 63521 0.66 0.746318
Target:  5'- aAGCGCCCgCUGgGCCCgagcuccagggucgUggguccGGCCGGCAGg -3'
miRNA:   3'- -UCGUGGG-GAUgUGGG--------------A------CCGGUCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.