miRNA display CGI


Results 141 - 160 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 137893 0.67 0.680127
Target:  5'- cGGCGCCCCaGCGCCgCgGaGCUAcuGCGGCu -3'
miRNA:   3'- -UCGUGGGGaUGUGG-GaC-CGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54799 0.67 0.690182
Target:  5'- gGGCcCCCCggccgcgaGCCUgggGGCCAGguGCu -3'
miRNA:   3'- -UCGuGGGGaug-----UGGGa--CCGGUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 81875 0.67 0.690182
Target:  5'- aGGUACCCgagGCcgaagucccggGCCCaGGCCAGCAcccGCa -3'
miRNA:   3'- -UCGUGGGga-UG-----------UGGGaCCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 36005 0.67 0.690182
Target:  5'- aGGCGCUCCagGCugCggUGGCgGGCGGCg -3'
miRNA:   3'- -UCGUGGGGa-UGugGg-ACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 39251 0.67 0.690182
Target:  5'- aGGCGCCCgUuguccagguaGCGCUgcaUGGgCAGCAGCa -3'
miRNA:   3'- -UCGUGGGgA----------UGUGGg--ACCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 40881 0.67 0.690182
Target:  5'- cGGcCAUUCauaUACGCCC-GGCCGGCGAa -3'
miRNA:   3'- -UC-GUGGGg--AUGUGGGaCCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 55718 0.67 0.690182
Target:  5'- cGCGCCCC-GC-CUCgggGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGGaUGuGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66611 0.67 0.690182
Target:  5'- gGGcCGCUCC-ACGCCCaGGCCGuCGGCa -3'
miRNA:   3'- -UC-GUGGGGaUGUGGGaCCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 39361 0.67 0.680127
Target:  5'- cAGCACggCCUGCACgUugcgGGCCAGCuGCu -3'
miRNA:   3'- -UCGUGg-GGAUGUGgGa---CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 34646 0.67 0.680127
Target:  5'- uGCACaCCCgggccaccgGCGCCagGGCCAGCGc- -3'
miRNA:   3'- uCGUG-GGGa--------UGUGGgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 20221 0.67 0.680127
Target:  5'- cAGCGcCCCCUGCGUCaugGGCCaggccuccgcgGGCAGCu -3'
miRNA:   3'- -UCGU-GGGGAUGUGGga-CCGG-----------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 137548 0.67 0.659909
Target:  5'- cGC-CCCCgaggUCCUGGCCGGgGACc -3'
miRNA:   3'- uCGuGGGGauguGGGACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 73810 0.67 0.659909
Target:  5'- cGGCGCCCCgcgcuccCACCCcagcucgucCCAGCGGCa -3'
miRNA:   3'- -UCGUGGGGau-----GUGGGacc------GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105008 0.67 0.659909
Target:  5'- cGGCGCCCCUcGCGCCCcgcGGugccgacugacCCGGCGc- -3'
miRNA:   3'- -UCGUGGGGA-UGUGGGa--CC-----------GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 146041 0.67 0.659909
Target:  5'- uGC-CCCCgGCACCgCUcGCCGGCAcGCa -3'
miRNA:   3'- uCGuGGGGaUGUGG-GAcCGGUCGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 90706 0.67 0.670033
Target:  5'- cAGCACCCacggGC-CCCUGcGCUugggGGCGAUg -3'
miRNA:   3'- -UCGUGGGga--UGuGGGAC-CGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 101589 0.67 0.670033
Target:  5'- aGGCACgCCggguUACCCaUGGCCAG-GGCg -3'
miRNA:   3'- -UCGUGgGGau--GUGGG-ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 31933 0.67 0.670033
Target:  5'- cGCGCCgCUcGCuCCCcggGGCCAGCGu- -3'
miRNA:   3'- uCGUGGgGA-UGuGGGa--CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 52306 0.67 0.670033
Target:  5'- aGGCGccguCCCCgccguCGCCC--GCCGGCGACg -3'
miRNA:   3'- -UCGU----GGGGau---GUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 13045 0.67 0.680127
Target:  5'- gGGCcgGCCCCgguCGCCC---CCAGCGACa -3'
miRNA:   3'- -UCG--UGGGGau-GUGGGaccGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.