miRNA display CGI


Results 161 - 180 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 18472 0.67 0.700189
Target:  5'- cGCGgCCCcGCGCCCgcggGGCCcagacacaGGCAGa -3'
miRNA:   3'- uCGUgGGGaUGUGGGa---CCGG--------UCGUUg -5'
21382 5' -59.3 NC_004812.1 + 128132 0.67 0.649763
Target:  5'- uGGCGCCgCg--GCCCaGGCgCGGCGGCg -3'
miRNA:   3'- -UCGUGGgGaugUGGGaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 151684 0.67 0.649763
Target:  5'- cAGCGCCgCCU---CCCgGGCC-GCAGCg -3'
miRNA:   3'- -UCGUGG-GGAuguGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 26632 0.67 0.658896
Target:  5'- cAGCGCCUCgugggUGCGCUgguaguucuuauaUUGGCCGGCGAa -3'
miRNA:   3'- -UCGUGGGG-----AUGUGG-------------GACCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 88017 0.67 0.659909
Target:  5'- uGgACCCUguuCACCCggagGGCCGGCc-- -3'
miRNA:   3'- uCgUGGGGau-GUGGGa---CCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 90706 0.67 0.670033
Target:  5'- cAGCACCCacggGC-CCCUGcGCUugggGGCGAUg -3'
miRNA:   3'- -UCGUGGGga--UGuGGGAC-CGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 146041 0.67 0.659909
Target:  5'- uGC-CCCCgGCACCgCUcGCCGGCAcGCa -3'
miRNA:   3'- uCGuGGGGaUGUGG-GAcCGGUCGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 137548 0.67 0.659909
Target:  5'- cGC-CCCCgaggUCCUGGCCGGgGACc -3'
miRNA:   3'- uCGuGGGGauguGGGACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 73810 0.67 0.659909
Target:  5'- cGGCGCCCCgcgcuccCACCCcagcucgucCCAGCGGCa -3'
miRNA:   3'- -UCGUGGGGau-----GUGGGacc------GGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105008 0.67 0.659909
Target:  5'- cGGCGCCCCUcGCGCCCcgcGGugccgacugacCCGGCGc- -3'
miRNA:   3'- -UCGUGGGGA-UGUGGGa--CC-----------GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 107037 0.68 0.618258
Target:  5'- cAGCAgCCCC-AgGCCCugcucguacuggaUGGCCAGCGc- -3'
miRNA:   3'- -UCGU-GGGGaUgUGGG-------------ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 79986 0.68 0.616227
Target:  5'- cGCGCCCCggguCGCCCaGGCCGuguccgaggccaucGCcGCg -3'
miRNA:   3'- uCGUGGGGau--GUGGGaCCGGU--------------CGuUG- -5'
21382 5' -59.3 NC_004812.1 + 57490 0.68 0.619274
Target:  5'- --gGCCaCCUGCGggUCCUGGCCGGCc-- -3'
miRNA:   3'- ucgUGG-GGAUGU--GGGACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 74969 0.68 0.616227
Target:  5'- gAGC-CUCCUgcugaucagcauguACGCCCUggcGGCCAGgGGCg -3'
miRNA:   3'- -UCGuGGGGA--------------UGUGGGA---CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 133463 0.68 0.60912
Target:  5'- gGGCGCUg--ACGCUgUGcGCCAGCAGCa -3'
miRNA:   3'- -UCGUGGggaUGUGGgAC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 73010 0.68 0.629438
Target:  5'- cGCACCCacugGCGCCCgcuGCUggAGCGGCu -3'
miRNA:   3'- uCGUGGGga--UGUGGGac-CGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 71334 0.68 0.619274
Target:  5'- uGGgGCCCgCUGCACaCCgcggugacgcUGGCCAGCu-- -3'
miRNA:   3'- -UCgUGGG-GAUGUG-GG----------ACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 3981 0.68 0.619274
Target:  5'- aGGuCGCCgCCga-GCCCUcGGCCAGCGc- -3'
miRNA:   3'- -UC-GUGG-GGaugUGGGA-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 96114 0.68 0.618258
Target:  5'- -cUACCCCcgUccguucuucaaccGCGCCCUGGCCGGCc-- -3'
miRNA:   3'- ucGUGGGG--A-------------UGUGGGACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 148942 0.68 0.619274
Target:  5'- -cCACCCCcGCucccgGCCCgcgGGCCcGCAGCu -3'
miRNA:   3'- ucGUGGGGaUG-----UGGGa--CCGGuCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.