miRNA display CGI


Results 41 - 60 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 87850 0.72 0.375468
Target:  5'- uGUACCUgga-GCCCUGGCaCAGCGACa -3'
miRNA:   3'- uCGUGGGgaugUGGGACCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 103604 0.72 0.374656
Target:  5'- cGCGCCCCgggACGugcuacagccgccCCCUGGUCAGCuuCc -3'
miRNA:   3'- uCGUGGGGa--UGU-------------GGGACCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 8150 0.72 0.375468
Target:  5'- cGCACCCCU-CGCCCcgagcgGGCgAGgGACu -3'
miRNA:   3'- uCGUGGGGAuGUGGGa-----CCGgUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 112452 0.72 0.417546
Target:  5'- cGGC-CCCCgaGCGCCCUccGGCCguccGGCGACc -3'
miRNA:   3'- -UCGuGGGGa-UGUGGGA--CCGG----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 19806 0.72 0.417546
Target:  5'- gGGCgGCUCCUcgcugcugcGCAUCUcGGCCAGCAGCu -3'
miRNA:   3'- -UCG-UGGGGA---------UGUGGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142173 0.72 0.417546
Target:  5'- gGGCGCCaUCguugGCGCgCUGGCCGGCGc- -3'
miRNA:   3'- -UCGUGG-GGa---UGUGgGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 106708 0.72 0.408902
Target:  5'- cGgGCCCCgggGgGCCCUcggGGUCGGCGGCg -3'
miRNA:   3'- uCgUGGGGa--UgUGGGA---CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 37208 0.72 0.417546
Target:  5'- cGGCGCCCCcggGCACgCggggGGCCccgggcaggaggGGCAGCa -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGa---CCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28075 0.72 0.378727
Target:  5'- gGGCaaccGCCUCUGCggGCCCgacacggccgccugGGCCGGCAACu -3'
miRNA:   3'- -UCG----UGGGGAUG--UGGGa-------------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 75246 0.72 0.383652
Target:  5'- aAGCGCgCCCUcacggcCGCCCUGGCgGGCcuGCg -3'
miRNA:   3'- -UCGUG-GGGAu-----GUGGGACCGgUCGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 55979 0.72 0.383652
Target:  5'- cGCGCCgCCgUGCGCgcgauCCUGGCCGGCGc- -3'
miRNA:   3'- uCGUGG-GG-AUGUG-----GGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 126327 0.72 0.391953
Target:  5'- aGGgACCCCUcggcgugcuGCGCCCUGGgcCCGGgGGCg -3'
miRNA:   3'- -UCgUGGGGA---------UGUGGGACC--GGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 71097 0.72 0.395306
Target:  5'- aGGCGCCCaaACACCCgcuccagGGCCgacuccagcccccgcGGCGGCa -3'
miRNA:   3'- -UCGUGGGgaUGUGGGa------CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 105079 0.72 0.40037
Target:  5'- uGGCcCCCCgGCGCCgCUGcGCCGGgGGCg -3'
miRNA:   3'- -UCGuGGGGaUGUGG-GAC-CGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 108887 0.72 0.408902
Target:  5'- cAGCACCCCgcCGCCUcGcGCCGGCcgGGCg -3'
miRNA:   3'- -UCGUGGGGauGUGGGaC-CGGUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 15987 0.71 0.462375
Target:  5'- cGGCgccgACCCCgcgGCCCcGcGCCAGCAGCa -3'
miRNA:   3'- -UCG----UGGGGaugUGGGaC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16168 0.71 0.435164
Target:  5'- cGGCGCgCCCgacuggggGCGCUCgaucGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGa-------UGUGGGac--CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 58070 0.71 0.453204
Target:  5'- cGGCGCCCg-GCGCCgaGGCCGcGCAcACg -3'
miRNA:   3'- -UCGUGGGgaUGUGGgaCCGGU-CGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 17527 0.71 0.462375
Target:  5'- cGGCuCCCCgUGCaACCCagGGCCAGCcuCg -3'
miRNA:   3'- -UCGuGGGG-AUG-UGGGa-CCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 151809 0.71 0.431606
Target:  5'- gGGCGCCuUCUACGCCCgcuaccgcgacggGuacGCCAGCGGCg -3'
miRNA:   3'- -UCGUGG-GGAUGUGGGa------------C---CGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.