Results 81 - 100 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21382 | 5' | -59.3 | NC_004812.1 | + | 12973 | 0.7 | 0.481004 |
Target: 5'- cGGCGCUCC-GCGCCCggGGCCGcGCucGCg -3' miRNA: 3'- -UCGUGGGGaUGUGGGa-CCGGU-CGu-UG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 94082 | 0.7 | 0.475377 |
Target: 5'- gGGaACCCCUgccgcccgcucgcguGCGCCCUGGCCcuGguGCg -3' miRNA: 3'- -UCgUGGGGA---------------UGUGGGACCGGu-CguUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 34250 | 0.7 | 0.519302 |
Target: 5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3' miRNA: 3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 102242 | 0.7 | 0.509608 |
Target: 5'- cGGCccuGCCCCggaACACCUggGGUCGGCGAg -3' miRNA: 3'- -UCG---UGGGGa--UGUGGGa-CCGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 3349 | 0.7 | 0.519302 |
Target: 5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3' miRNA: 3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 9001 | 0.7 | 0.519302 |
Target: 5'- aGGCGCCaagCUGagGCCCcgGGCCAGCAu- -3' miRNA: 3'- -UCGUGGg--GAUg-UGGGa-CCGGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 87607 | 0.7 | 0.518329 |
Target: 5'- cGCACUCCc-CGCCCcgcagcgUGGCCGGCAc- -3' miRNA: 3'- uCGUGGGGauGUGGG-------ACCGGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 125794 | 0.7 | 0.519302 |
Target: 5'- uGGCGCcgCCCUGCccccccgugggGCCCUcGGCCcGCGGCc -3' miRNA: 3'- -UCGUG--GGGAUG-----------UGGGA-CCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 89026 | 0.7 | 0.509608 |
Target: 5'- cGCGCCUguuggaCUGCACCgagGGCCGGCGugGCg -3' miRNA: 3'- uCGUGGG------GAUGUGGga-CCGGUCGU--UG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 98748 | 0.7 | 0.509608 |
Target: 5'- -uCACCgCCcGCGCCCUGGagcgCGGCGGCg -3' miRNA: 3'- ucGUGG-GGaUGUGGGACCg---GUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 50174 | 0.7 | 0.509608 |
Target: 5'- gGGCcCUCUUGgGCCCgUGGCCGGCGc- -3' miRNA: 3'- -UCGuGGGGAUgUGGG-ACCGGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 28471 | 0.7 | 0.49999 |
Target: 5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3' miRNA: 3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 15744 | 0.7 | 0.519302 |
Target: 5'- -cCACCCCcGCGCCUUGcgcGCCuGCGGCa -3' miRNA: 3'- ucGUGGGGaUGUGGGAC---CGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 88975 | 0.7 | 0.471643 |
Target: 5'- aGGgGCCCCaGCcguCCCUGGCCA-CGGCc -3' miRNA: 3'- -UCgUGGGGaUGu--GGGACCGGUcGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 89724 | 0.7 | 0.49999 |
Target: 5'- gAGCuGCUCCUGCACaaagcccggCUGGCguGCGGCa -3' miRNA: 3'- -UCG-UGGGGAUGUGg--------GACCGguCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 34747 | 0.7 | 0.49999 |
Target: 5'- cGCcCCUCUGCGCCgUGGUCGccGCGGCc -3' miRNA: 3'- uCGuGGGGAUGUGGgACCGGU--CGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 35101 | 0.7 | 0.49999 |
Target: 5'- gGGCGCCCCcgcgGCGCCC-GGCCccacGCGc- -3' miRNA: 3'- -UCGUGGGGa---UGUGGGaCCGGu---CGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 120352 | 0.7 | 0.469782 |
Target: 5'- cGcCGCCCCUGCaACCCgcgggggcgcgcGGCCGGgGGCg -3' miRNA: 3'- uC-GUGGGGAUG-UGGGa-----------CCGGUCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 77590 | 0.69 | 0.578789 |
Target: 5'- uGGUACCggcggUCgcggGCGuCCCcGGCCAGCAGCg -3' miRNA: 3'- -UCGUGG-----GGa---UGU-GGGaCCGGUCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 133109 | 0.69 | 0.578789 |
Target: 5'- cGGCGCCgCC-GCGCCC-GGCCcGCcGCa -3' miRNA: 3'- -UCGUGG-GGaUGUGGGaCCGGuCGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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