miRNA display CGI


Results 101 - 120 of 366 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 28546 0.69 0.5389
Target:  5'- gAGCGgCCCgaccucggGCGCCgCgauguucGGCCGGCAGCu -3'
miRNA:   3'- -UCGUgGGGa-------UGUGG-Ga------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77337 0.69 0.5389
Target:  5'- cAGC-UCCUUACGgacgacgagcCCCUGGCCcGCGGCg -3'
miRNA:   3'- -UCGuGGGGAUGU----------GGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54424 0.69 0.5389
Target:  5'- uGCACCaCCgugGCGCC--GGUCGGCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGgaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66324 0.69 0.536928
Target:  5'- aGGCGCCCgU-CGCCCgcgcugcaggcgGGgCAGCAGCc -3'
miRNA:   3'- -UCGUGGGgAuGUGGGa-----------CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 126184 0.69 0.532992
Target:  5'- cGCACCCCgGCGCUCccgcGGCCcggccuccucggcgcGGCAGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGa---CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 8258 0.69 0.529067
Target:  5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3'
miRNA:   3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 65073 0.69 0.529067
Target:  5'- cGGCgGCCgCCgcCGCCCUGGCCGcGCGc- -3'
miRNA:   3'- -UCG-UGG-GGauGUGGGACCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 14783 0.69 0.5389
Target:  5'- cGCGuCCCCgccgacccGCGCCaUGGCCgAGCGGCa -3'
miRNA:   3'- uCGU-GGGGa-------UGUGGgACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 68194 0.69 0.5389
Target:  5'- gGGCGCgCCggACGCCC-GGCCGcgcGCGGCc -3'
miRNA:   3'- -UCGUGgGGa-UGUGGGaCCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76053 0.69 0.5389
Target:  5'- cGGCGgCCCaGCGCUCgcGGCCGGCGcggGCg -3'
miRNA:   3'- -UCGUgGGGaUGUGGGa-CCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 111200 0.69 0.529067
Target:  5'- cGCGCCCCUGC-UUC-GGUgGGCGACa -3'
miRNA:   3'- uCGUGGGGAUGuGGGaCCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 111258 0.69 0.529067
Target:  5'- gAGUuuCCCCgcaACCCgGGCCAGCuGCu -3'
miRNA:   3'- -UCGu-GGGGaugUGGGaCCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 109470 0.69 0.529067
Target:  5'- gAGCGgCCCUGCAgcgaCUUGuucagcagcGCCAGCAGCg -3'
miRNA:   3'- -UCGUgGGGAUGUg---GGAC---------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 133109 0.69 0.578789
Target:  5'- cGGCGCCgCC-GCGCCC-GGCCcGCcGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGaCCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 77590 0.69 0.578789
Target:  5'- uGGUACCggcggUCgcggGCGuCCCcGGCCAGCAGCg -3'
miRNA:   3'- -UCGUGG-----GGa---UGU-GGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 120048 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 75368 0.69 0.558744
Target:  5'- gAGCGCCCCgacGCACgC-GGCCAG-GGCg -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 130382 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 74651 0.69 0.546811
Target:  5'- cGGCgcucuugGCCCCgaugGCGCCCugguacuUGGCCGGgAGCc -3'
miRNA:   3'- -UCG-------UGGGGa---UGUGGG-------ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 124972 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.