miRNA display CGI


Results 121 - 140 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 111258 0.69 0.529067
Target:  5'- gAGUuuCCCCgcaACCCgGGCCAGCuGCu -3'
miRNA:   3'- -UCGu-GGGGaugUGGGaCCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 111200 0.69 0.529067
Target:  5'- cGCGCCCCUGC-UUC-GGUgGGCGACa -3'
miRNA:   3'- uCGUGGGGAUGuGGGaCCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150949 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4874 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 79851 0.69 0.578789
Target:  5'- gGGgGCCCUggaGCACCCgacGGCCgacacGGCGGCc -3'
miRNA:   3'- -UCgUGGGGa--UGUGGGa--CCGG-----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77337 0.69 0.5389
Target:  5'- cAGC-UCCUUACGgacgacgagcCCCUGGCCcGCGGCg -3'
miRNA:   3'- -UCGuGGGGAUGU----------GGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28546 0.69 0.5389
Target:  5'- gAGCGgCCCgaccucggGCGCCgCgauguucGGCCGGCAGCu -3'
miRNA:   3'- -UCGUgGGGa-------UGUGG-Ga------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 61985 0.69 0.5389
Target:  5'- cGCGCCCgUcucuccGCGCCCaggGGCC-GCGGCu -3'
miRNA:   3'- uCGUGGGgA------UGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 65501 0.69 0.5389
Target:  5'- aAGCgACCCC-ACGgCCggcaGGCCGGCGAg -3'
miRNA:   3'- -UCG-UGGGGaUGUgGGa---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 14783 0.69 0.5389
Target:  5'- cGCGuCCCCgccgacccGCGCCaUGGCCgAGCGGCa -3'
miRNA:   3'- uCGU-GGGGa-------UGUGGgACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 68194 0.69 0.5389
Target:  5'- gGGCGCgCCggACGCCC-GGCCGcgcGCGGCc -3'
miRNA:   3'- -UCGUGgGGa-UGUGGGaCCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76053 0.69 0.5389
Target:  5'- cGGCGgCCCaGCGCUCgcGGCCGGCGcggGCg -3'
miRNA:   3'- -UCGUgGGGaUGUGGGa-CCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 74651 0.69 0.546811
Target:  5'- cGGCgcucuugGCCCCgaugGCGCCCugguacuUGGCCGGgAGCc -3'
miRNA:   3'- -UCG-------UGGGGa---UGUGGG-------ACCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 120048 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 130382 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77590 0.69 0.578789
Target:  5'- uGGUACCggcggUCgcggGCGuCCCcGGCCAGCAGCg -3'
miRNA:   3'- -UCGUGG-----GGa---UGU-GGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 133109 0.69 0.578789
Target:  5'- cGGCGCCgCC-GCGCCC-GGCCcGCcGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGaCCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 92405 0.69 0.578789
Target:  5'- gAGCACCUUgGCGCCCUGguaucccacguGCCGGCc-- -3'
miRNA:   3'- -UCGUGGGGaUGUGGGAC-----------CGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 109470 0.69 0.529067
Target:  5'- gAGCGgCCCUGCAgcgaCUUGuucagcagcGCCAGCAGCg -3'
miRNA:   3'- -UCGUgGGGAUGUg---GGAC---------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 21956 0.68 0.588871
Target:  5'- gAGCGCCuCCUGCAggaccUCCgGGCcCAGCcGCu -3'
miRNA:   3'- -UCGUGG-GGAUGU-----GGGaCCG-GUCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.