miRNA display CGI


Results 141 - 160 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 140577 0.68 0.619274
Target:  5'- gGGgGCCUCUGCgcgcugACCCUGGCCgccaugGGCGccgGCg -3'
miRNA:   3'- -UCgUGGGGAUG------UGGGACCGG------UCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 112202 0.68 0.619274
Target:  5'- cGGCGCCCCgggcuauccACGCCCcuucGGCcCGGCcgGACg -3'
miRNA:   3'- -UCGUGGGGa--------UGUGGGa---CCG-GUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 87690 0.68 0.619274
Target:  5'- cGUcgGCCCC---AUCCUGGCCcGCAGCg -3'
miRNA:   3'- uCG--UGGGGaugUGGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16911 0.68 0.619274
Target:  5'- aGGCGCUgCUGCGCa-UGGCCuGCGAg -3'
miRNA:   3'- -UCGUGGgGAUGUGggACCGGuCGUUg -5'
21382 5' -59.3 NC_004812.1 + 60300 0.68 0.618258
Target:  5'- cGCGCCCCcccuuggggGCcuuGCCCUGGCCgccgucgAGCAu- -3'
miRNA:   3'- uCGUGGGGa--------UG---UGGGACCGG-------UCGUug -5'
21382 5' -59.3 NC_004812.1 + 129489 0.68 0.60912
Target:  5'- aGGuCGCCgCCguaGCCCUcGGCCAGCGc- -3'
miRNA:   3'- -UC-GUGG-GGaugUGGGA-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 94357 0.68 0.60912
Target:  5'- cGGCgcgGCCCCgGCgcgcugguuuGCCCUGGC-GGCGGCg -3'
miRNA:   3'- -UCG---UGGGGaUG----------UGGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51370 0.68 0.619274
Target:  5'- cGCGCCCCagUACGCCCagcagugggagGcGCCGGCcGCc -3'
miRNA:   3'- uCGUGGGG--AUGUGGGa----------C-CGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 118041 0.68 0.619274
Target:  5'- -cCACCCCcGCucccgGCCCgcgGGCCcGCAGCu -3'
miRNA:   3'- ucGUGGGGaUG-----UGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 40277 0.68 0.629438
Target:  5'- aAGguCUCCUGCGCCgccGCCAGCAGg -3'
miRNA:   3'- -UCguGGGGAUGUGGgacCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 21956 0.68 0.588871
Target:  5'- gAGCGCCuCCUGCAggaccUCCgGGCcCAGCcGCu -3'
miRNA:   3'- -UCGUGG-GGAUGU-----GGGaCCG-GUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 74556 0.68 0.64062
Target:  5'- cGGCACCCgCgcCACCaCguccucgcggaggcgGGCCAGCAGg -3'
miRNA:   3'- -UCGUGGG-GauGUGG-Ga--------------CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 96479 0.68 0.639603
Target:  5'- cGGC-CCCCgcggaggACGCCgccGCCAGCGGCg -3'
miRNA:   3'- -UCGuGGGGa------UGUGGgacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 18579 0.68 0.639603
Target:  5'- cGcCGCCgCCgccGCACCC-GcGCCGGCGGCg -3'
miRNA:   3'- uC-GUGG-GGa--UGUGGGaC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77130 0.68 0.638587
Target:  5'- gAGCGCgUCCUcggccagGCGCCgCgucucGGCCGGCAGCc -3'
miRNA:   3'- -UCGUG-GGGA-------UGUGG-Ga----CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 118075 0.68 0.633504
Target:  5'- cGCGCCCCg--ACCCcGGCCGccgcgcgucuccggcGCGACc -3'
miRNA:   3'- uCGUGGGGaugUGGGaCCGGU---------------CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 151191 0.68 0.629438
Target:  5'- cGCuguCCCCgccguCGUCCgcggGGCCGGCGACg -3'
miRNA:   3'- uCGu--GGGGau---GUGGGa---CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 32372 0.68 0.598983
Target:  5'- cGCGCCCCccGCcagGCCCgccGCCAGguGCg -3'
miRNA:   3'- uCGUGGGGa-UG---UGGGac-CGGUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 95590 0.68 0.629438
Target:  5'- cGCGCCC--GCGCgCgGGCgCGGCAGCa -3'
miRNA:   3'- uCGUGGGgaUGUGgGaCCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51489 0.68 0.639603
Target:  5'- cGCAgCCCUGCgcggucGCUUUGGCCGcGCAGg -3'
miRNA:   3'- uCGUgGGGAUG------UGGGACCGGU-CGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.