miRNA display CGI


Results 61 - 80 of 366 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 16168 0.71 0.435164
Target:  5'- cGGCGCgCCCgacuggggGCGCUCgaucGCCAGCAGCg -3'
miRNA:   3'- -UCGUG-GGGa-------UGUGGGac--CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 46886 0.71 0.435164
Target:  5'- cGCAgCCCCaGCGCCCcggggcgGGCgCGGCGGCc -3'
miRNA:   3'- uCGU-GGGGaUGUGGGa------CCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 107718 0.71 0.444132
Target:  5'- gAGCACCCC-GCGCUCguagcGGCCGcccGCGGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa----CCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 78136 0.71 0.453204
Target:  5'- cGCGCCUCgcgGCGCaCgaGGCCGGCAu- -3'
miRNA:   3'- uCGUGGGGa--UGUG-GgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 58070 0.71 0.453204
Target:  5'- cGGCGCCCg-GCGCCgaGGCCGcGCAcACg -3'
miRNA:   3'- -UCGUGGGgaUGUGGgaCCGGU-CGU-UG- -5'
21382 5' -59.3 NC_004812.1 + 80639 0.71 0.453204
Target:  5'- uGCGCCgCCUGCagGCgCUGGCCGcGCAGa -3'
miRNA:   3'- uCGUGG-GGAUG--UGgGACCGGU-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 20518 0.71 0.453204
Target:  5'- gGGCACCCCcgucgucgUGCGCUC-GGCCGaccuGCGGCg -3'
miRNA:   3'- -UCGUGGGG--------AUGUGGGaCCGGU----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 17527 0.71 0.462375
Target:  5'- cGGCuCCCCgUGCaACCCagGGCCAGCcuCg -3'
miRNA:   3'- -UCGuGGGG-AUG-UGGGa-CCGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 15987 0.71 0.462375
Target:  5'- cGGCgccgACCCCgcgGCCCcGcGCCAGCAGCa -3'
miRNA:   3'- -UCG----UGGGGaugUGGGaC-CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 136018 0.71 0.462375
Target:  5'- gGGCGCCCC---GCCCgcggGGCCAuCGGCg -3'
miRNA:   3'- -UCGUGGGGaugUGGGa---CCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 120352 0.7 0.469782
Target:  5'- cGcCGCCCCUGCaACCCgcgggggcgcgcGGCCGGgGGCg -3'
miRNA:   3'- uC-GUGGGGAUG-UGGGa-----------CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 88975 0.7 0.471643
Target:  5'- aGGgGCCCCaGCcguCCCUGGCCA-CGGCc -3'
miRNA:   3'- -UCgUGGGGaUGu--GGGACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 94082 0.7 0.475377
Target:  5'- gGGaACCCCUgccgcccgcucgcguGCGCCCUGGCCcuGguGCg -3'
miRNA:   3'- -UCgUGGGGA---------------UGUGGGACCGGu-CguUG- -5'
21382 5' -59.3 NC_004812.1 + 12973 0.7 0.481004
Target:  5'- cGGCGCUCC-GCGCCCggGGCCGcGCucGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGGGa-CCGGU-CGu-UG- -5'
21382 5' -59.3 NC_004812.1 + 108902 0.7 0.490455
Target:  5'- uGCACCagCCagUACGCCCgggGGCCcGCGGCc -3'
miRNA:   3'- uCGUGG--GG--AUGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76201 0.7 0.49999
Target:  5'- cGGguCCCCggcggaGCCCUcGGCguGCAGCa -3'
miRNA:   3'- -UCguGGGGaug---UGGGA-CCGguCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 3846 0.7 0.49999
Target:  5'- cGCcCCUCUGCGCCgUGGUCGccGCGGCc -3'
miRNA:   3'- uCGuGGGGAUGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4200 0.7 0.49999
Target:  5'- gGGCGCCCCcgcgGCGCCC-GGCCccacGCGc- -3'
miRNA:   3'- -UCGUGGGGa---UGUGGGaCCGGu---CGUug -5'
21382 5' -59.3 NC_004812.1 + 153979 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89724 0.7 0.49999
Target:  5'- gAGCuGCUCCUGCACaaagcccggCUGGCguGCGGCa -3'
miRNA:   3'- -UCG-UGGGGAUGUGg--------GACCGguCGUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.