miRNA display CGI


Results 81 - 100 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 153979 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28471 0.7 0.49999
Target:  5'- cGCGCCgCCgccGCGCCUgGGCC-GCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 34747 0.7 0.49999
Target:  5'- cGCcCCUCUGCGCCgUGGUCGccGCGGCc -3'
miRNA:   3'- uCGuGGGGAUGUGGgACCGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 58168 0.7 0.49999
Target:  5'- gGGCGCCCCcGCGCCUgccGCCccGCGGCc -3'
miRNA:   3'- -UCGUGGGGaUGUGGGac-CGGu-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 147626 0.7 0.509608
Target:  5'- uGGCGCCUCUGCGCgCCagUGGgC-GCGACg -3'
miRNA:   3'- -UCGUGGGGAUGUG-GG--ACCgGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 98748 0.7 0.509608
Target:  5'- -uCACCgCCcGCGCCCUGGagcgCGGCGGCg -3'
miRNA:   3'- ucGUGG-GGaUGUGGGACCg---GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 89026 0.7 0.509608
Target:  5'- cGCGCCUguuggaCUGCACCgagGGCCGGCGugGCg -3'
miRNA:   3'- uCGUGGG------GAUGUGGga-CCGGUCGU--UG- -5'
21382 5' -59.3 NC_004812.1 + 50174 0.7 0.509608
Target:  5'- gGGCcCUCUUGgGCCCgUGGCCGGCGc- -3'
miRNA:   3'- -UCGuGGGGAUgUGGG-ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 102242 0.7 0.509608
Target:  5'- cGGCccuGCCCCggaACACCUggGGUCGGCGAg -3'
miRNA:   3'- -UCG---UGGGGa--UGUGGGa-CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 143292 0.7 0.509608
Target:  5'- cGCACCCCcgAC-CCCcGGCgCGGCGGa -3'
miRNA:   3'- uCGUGGGGa-UGuGGGaCCG-GUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 11044 0.7 0.509608
Target:  5'- gGGCGCCgCCggugGCGCCCgaccccgGGaCCAGCGc- -3'
miRNA:   3'- -UCGUGG-GGa---UGUGGGa------CC-GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 87607 0.7 0.518329
Target:  5'- cGCACUCCc-CGCCCcgcagcgUGGCCGGCAc- -3'
miRNA:   3'- uCGUGGGGauGUGGG-------ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 135275 0.7 0.519302
Target:  5'- aAGCACUaCUucgagcgguGCACCCUGGCCuGCcuGGCa -3'
miRNA:   3'- -UCGUGGgGA---------UGUGGGACCGGuCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 15744 0.7 0.519302
Target:  5'- -cCACCCCcGCGCCUUGcgcGCCuGCGGCa -3'
miRNA:   3'- ucGUGGGGaUGUGGGAC---CGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 34250 0.7 0.519302
Target:  5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3'
miRNA:   3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 125794 0.7 0.519302
Target:  5'- uGGCGCcgCCCUGCccccccgugggGCCCUcGGCCcGCGGCc -3'
miRNA:   3'- -UCGUG--GGGAUG-----------UGGGA-CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 9001 0.7 0.519302
Target:  5'- aGGCGCCaagCUGagGCCCcgGGCCAGCAu- -3'
miRNA:   3'- -UCGUGGg--GAUg-UGGGa-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 3349 0.7 0.519302
Target:  5'- cGCGCCCC-GCGCCCcGGCCcccgccGGgAACc -3'
miRNA:   3'- uCGUGGGGaUGUGGGaCCGG------UCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 65073 0.69 0.529067
Target:  5'- cGGCgGCCgCCgcCGCCCUGGCCGcGCGc- -3'
miRNA:   3'- -UCG-UGG-GGauGUGGGACCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 8258 0.69 0.529067
Target:  5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3'
miRNA:   3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.