miRNA display CGI


Results 101 - 120 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 124972 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 109470 0.69 0.529067
Target:  5'- gAGCGgCCCUGCAgcgaCUUGuucagcagcGCCAGCAGCg -3'
miRNA:   3'- -UCGUgGGGAUGUg---GGAC---------CGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 111258 0.69 0.529067
Target:  5'- gAGUuuCCCCgcaACCCgGGCCAGCuGCu -3'
miRNA:   3'- -UCGu-GGGGaugUGGGaCCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 155873 0.69 0.529067
Target:  5'- cGCGCCgCCccCACCCccGCCGGCGACc -3'
miRNA:   3'- uCGUGG-GGauGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 39159 0.69 0.529067
Target:  5'- cGC-CCCCggggGCGCCgggGGCCGGcCGACg -3'
miRNA:   3'- uCGuGGGGa---UGUGGga-CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 111200 0.69 0.529067
Target:  5'- cGCGCCCCUGC-UUC-GGUgGGCGACa -3'
miRNA:   3'- uCGUGGGGAUGuGGGaCCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 676 0.69 0.532992
Target:  5'- cGCACCCCgGCGCUCccgcGGCCcggccuccucggcgcGGCAGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGa---CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 126184 0.69 0.532992
Target:  5'- cGCACCCCgGCGCUCccgcGGCCcggccuccucggcgcGGCAGCc -3'
miRNA:   3'- uCGUGGGGaUGUGGGa---CCGG---------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66324 0.69 0.536928
Target:  5'- aGGCGCCCgU-CGCCCgcgcugcaggcgGGgCAGCAGCc -3'
miRNA:   3'- -UCGUGGGgAuGUGGGa-----------CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54424 0.69 0.5389
Target:  5'- uGCACCaCCgugGCGCC--GGUCGGCGGCg -3'
miRNA:   3'- uCGUGG-GGa--UGUGGgaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 77337 0.69 0.5389
Target:  5'- cAGC-UCCUUACGgacgacgagcCCCUGGCCcGCGGCg -3'
miRNA:   3'- -UCGuGGGGAUGU----------GGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 28546 0.69 0.5389
Target:  5'- gAGCGgCCCgaccucggGCGCCgCgauguucGGCCGGCAGCu -3'
miRNA:   3'- -UCGUgGGGa-------UGUGG-Ga------CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 61985 0.69 0.5389
Target:  5'- cGCGCCCgUcucuccGCGCCCaggGGCC-GCGGCu -3'
miRNA:   3'- uCGUGGGgA------UGUGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 65501 0.69 0.5389
Target:  5'- aAGCgACCCC-ACGgCCggcaGGCCGGCGAg -3'
miRNA:   3'- -UCG-UGGGGaUGUgGGa---CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 14783 0.69 0.5389
Target:  5'- cGCGuCCCCgccgacccGCGCCaUGGCCgAGCGGCa -3'
miRNA:   3'- uCGU-GGGGa-------UGUGGgACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 68194 0.69 0.5389
Target:  5'- gGGCGCgCCggACGCCC-GGCCGcgcGCGGCc -3'
miRNA:   3'- -UCGUGgGGa-UGUGGGaCCGGU---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 76053 0.69 0.5389
Target:  5'- cGGCGgCCCaGCGCUCgcGGCCGGCGcggGCg -3'
miRNA:   3'- -UCGUgGGGaUGUGGGa-CCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 66777 0.69 0.5389
Target:  5'- cGCACgCCUGCACCCgcgccuCCAGCcACu -3'
miRNA:   3'- uCGUGgGGAUGUGGGacc---GGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 50031 0.69 0.5389
Target:  5'- cGCGCCgUCUGCGCCC-GGCCcgGGCGc- -3'
miRNA:   3'- uCGUGG-GGAUGUGGGaCCGG--UCGUug -5'
21382 5' -59.3 NC_004812.1 + 74651 0.69 0.546811
Target:  5'- cGGCgcucuugGCCCCgaugGCGCCCugguacuUGGCCGGgAGCc -3'
miRNA:   3'- -UCG-------UGGGGa---UGUGGG-------ACCGGUCgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.