miRNA display CGI


Results 121 - 140 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 55770 0.69 0.548794
Target:  5'- cGCG-CCCUGC-CCCUGGgCAGCcccGCg -3'
miRNA:   3'- uCGUgGGGAUGuGGGACCgGUCGu--UG- -5'
21382 5' -59.3 NC_004812.1 + 55131 0.69 0.548794
Target:  5'- cGCcggaCCCUGCGCCagGGCCAGgAGCu -3'
miRNA:   3'- uCGug--GGGAUGUGGgaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 62353 0.69 0.552768
Target:  5'- cGCGCCCgCggcGCGugggucggcgcgaacCCCaGGCCGGCGACg -3'
miRNA:   3'- uCGUGGG-Ga--UGU---------------GGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 75368 0.69 0.558744
Target:  5'- gAGCGCCCCgacGCACgC-GGCCAG-GGCg -3'
miRNA:   3'- -UCGUGGGGa--UGUGgGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 47008 0.69 0.558744
Target:  5'- uGC-CCCCgggGCGCCaUGGCCacccgauagacgGGCAGCg -3'
miRNA:   3'- uCGuGGGGa--UGUGGgACCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 120048 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112653 0.69 0.568744
Target:  5'- cGCACaccgaCCUgcgggACGCCCUGGaCCggAGCGACc -3'
miRNA:   3'- uCGUGg----GGA-----UGUGGGACC-GG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112738 0.69 0.568744
Target:  5'- cGCcUCCCUGCGguucgaCCUGGCCgAGCGAUc -3'
miRNA:   3'- uCGuGGGGAUGUg-----GGACCGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 20301 0.69 0.568744
Target:  5'- gAGCGgUCCUgacguccaGCGCCCggGGCC-GCGACg -3'
miRNA:   3'- -UCGUgGGGA--------UGUGGGa-CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 136857 0.69 0.568744
Target:  5'- uGGgACCCCcGCACCg-GGCUGGUGGCg -3'
miRNA:   3'- -UCgUGGGGaUGUGGgaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150949 0.69 0.568744
Target:  5'- cGUGCCCCUGCGggcucCCCUcGcGCCcGGCGACc -3'
miRNA:   3'- uCGUGGGGAUGU-----GGGA-C-CGG-UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 130382 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 4874 0.69 0.568744
Target:  5'- aAGCGgCCCguggcgucGCGCCC-GGCCacGGCGGCg -3'
miRNA:   3'- -UCGUgGGGa-------UGUGGGaCCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 145095 0.69 0.578789
Target:  5'- cAGCugaGCCCCacgcUGgGCUUUGGCCAGCAc- -3'
miRNA:   3'- -UCG---UGGGG----AUgUGGGACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 7601 0.69 0.578789
Target:  5'- cGGCGCCgCC-GCGCCC-GGCCcGCcGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGaCCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 77590 0.69 0.578789
Target:  5'- uGGUACCggcggUCgcggGCGuCCCcGGCCAGCAGCg -3'
miRNA:   3'- -UCGUGG-----GGa---UGU-GGGaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 133109 0.69 0.578789
Target:  5'- cGGCGCCgCC-GCGCCC-GGCCcGCcGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGaCCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 92405 0.69 0.578789
Target:  5'- gAGCACCUUgGCGCCCUGguaucccacguGCCGGCc-- -3'
miRNA:   3'- -UCGUGGGGaUGUGGGAC-----------CGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 79851 0.69 0.578789
Target:  5'- gGGgGCCCUggaGCACCCgacGGCCgacacGGCGGCc -3'
miRNA:   3'- -UCgUGGGGa--UGUGGGa--CCGG-----UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 21956 0.68 0.588871
Target:  5'- gAGCGCCuCCUGCAggaccUCCgGGCcCAGCcGCu -3'
miRNA:   3'- -UCGUGG-GGAUGU-----GGGaCCG-GUCGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.