miRNA display CGI


Results 141 - 160 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 21956 0.68 0.588871
Target:  5'- gAGCGCCuCCUGCAggaccUCCgGGCcCAGCcGCu -3'
miRNA:   3'- -UCGUGG-GGAUGU-----GGGaCCG-GUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 89189 0.68 0.592912
Target:  5'- cGGCACCCCcGCcgucugggagccgggGCCCcGGCUccgcgcGGCGGCg -3'
miRNA:   3'- -UCGUGGGGaUG---------------UGGGaCCGG------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 72856 0.68 0.598983
Target:  5'- gGGCGCgCUgGCGuCCCUGGC-GGCAGCc -3'
miRNA:   3'- -UCGUGgGGaUGU-GGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 54715 0.68 0.598983
Target:  5'- cGCGCCUCgggGCGCCCUaGcCCGGCGc- -3'
miRNA:   3'- uCGUGGGGa--UGUGGGAcC-GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 88631 0.68 0.598983
Target:  5'- cGGCGCCCCagUGCGCC---GCCGGCAu- -3'
miRNA:   3'- -UCGUGGGG--AUGUGGgacCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 43873 0.68 0.598983
Target:  5'- cGGCGCCgCCgcgcgguucGCGCCCggccgcGGCCGGCcGCc -3'
miRNA:   3'- -UCGUGG-GGa--------UGUGGGa-----CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 74538 0.68 0.598983
Target:  5'- cGCGCCCUcgauCcUCCUGGCC-GCAGCc -3'
miRNA:   3'- uCGUGGGGau--GuGGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 139865 0.68 0.598983
Target:  5'- cGGC-CCCCgggGCGCCCUgcgucgacgGGCgAGCGGg -3'
miRNA:   3'- -UCGuGGGGa--UGUGGGA---------CCGgUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 48224 0.68 0.598983
Target:  5'- gAGCggaGCCCCgcgGCCCagGGCCuccuGCAGCg -3'
miRNA:   3'- -UCG---UGGGGaugUGGGa-CCGGu---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 88434 0.68 0.598983
Target:  5'- cGCGCCCC--CGCCCgcGGCCGcCGACc -3'
miRNA:   3'- uCGUGGGGauGUGGGa-CCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 32372 0.68 0.598983
Target:  5'- cGCGCCCCccGCcagGCCCgccGCCAGguGCg -3'
miRNA:   3'- uCGUGGGGa-UG---UGGGac-CGGUCguUG- -5'
21382 5' -59.3 NC_004812.1 + 102215 0.68 0.603036
Target:  5'- gAGCAgCCCCggccgugcccgcggGCGCCCgacGGCCAG-AACu -3'
miRNA:   3'- -UCGU-GGGGa-------------UGUGGGa--CCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 129489 0.68 0.60912
Target:  5'- aGGuCGCCgCCguaGCCCUcGGCCAGCGc- -3'
miRNA:   3'- -UC-GUGG-GGaugUGGGA-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 94357 0.68 0.60912
Target:  5'- cGGCgcgGCCCCgGCgcgcugguuuGCCCUGGC-GGCGGCg -3'
miRNA:   3'- -UCG---UGGGGaUG----------UGGGACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 26693 0.68 0.60912
Target:  5'- cGCACCUgggCUACGCCaUGGCCGcCGGCc -3'
miRNA:   3'- uCGUGGG---GAUGUGGgACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 47697 0.68 0.60912
Target:  5'- gGGCGauuaCCCgacccggGCGCCC-GGCCGGCGc- -3'
miRNA:   3'- -UCGUg---GGGa------UGUGGGaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 152201 0.68 0.60912
Target:  5'- cGCACCUgggCUACGCCaUGGCCGcCGGCc -3'
miRNA:   3'- uCGUGGG---GAUGUGGgACCGGUcGUUG- -5'
21382 5' -59.3 NC_004812.1 + 103542 0.68 0.60912
Target:  5'- gGGCGgCCCUugaGCGCcgCCUGGCgGuGCAGCu -3'
miRNA:   3'- -UCGUgGGGA---UGUG--GGACCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 33751 0.68 0.60912
Target:  5'- gAGCACUucuuCCUGCggGCCCUcacgGGCuCGGCGGCc -3'
miRNA:   3'- -UCGUGG----GGAUG--UGGGA----CCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 47849 0.68 0.60912
Target:  5'- aGGuCGCCCCcGCGCCCcccaGCC-GCAGCg -3'
miRNA:   3'- -UC-GUGGGGaUGUGGGac--CGGuCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.