Results 161 - 180 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21382 | 5' | -59.3 | NC_004812.1 | + | 26693 | 0.68 | 0.60912 |
Target: 5'- cGCACCUgggCUACGCCaUGGCCGcCGGCc -3' miRNA: 3'- uCGUGGG---GAUGUGGgACCGGUcGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 47697 | 0.68 | 0.60912 |
Target: 5'- gGGCGauuaCCCgacccggGCGCCC-GGCCGGCGc- -3' miRNA: 3'- -UCGUg---GGGa------UGUGGGaCCGGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 55729 | 0.68 | 0.60912 |
Target: 5'- cGCACCCCgcguuccgggACGCCCUGuucGCCgAGCu-- -3' miRNA: 3'- uCGUGGGGa---------UGUGGGAC---CGG-UCGuug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 79986 | 0.68 | 0.616227 |
Target: 5'- cGCGCCCCggguCGCCCaGGCCGuguccgaggccaucGCcGCg -3' miRNA: 3'- uCGUGGGGau--GUGGGaCCGGU--------------CGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 74969 | 0.68 | 0.616227 |
Target: 5'- gAGC-CUCCUgcugaucagcauguACGCCCUggcGGCCAGgGGCg -3' miRNA: 3'- -UCGuGGGGA--------------UGUGGGA---CCGGUCgUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 60300 | 0.68 | 0.618258 |
Target: 5'- cGCGCCCCcccuuggggGCcuuGCCCUGGCCgccgucgAGCAu- -3' miRNA: 3'- uCGUGGGGa--------UG---UGGGACCGG-------UCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 96114 | 0.68 | 0.618258 |
Target: 5'- -cUACCCCcgUccguucuucaaccGCGCCCUGGCCGGCc-- -3' miRNA: 3'- ucGUGGGG--A-------------UGUGGGACCGGUCGuug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 107037 | 0.68 | 0.618258 |
Target: 5'- cAGCAgCCCC-AgGCCCugcucguacuggaUGGCCAGCGc- -3' miRNA: 3'- -UCGU-GGGGaUgUGGG-------------ACCGGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 57490 | 0.68 | 0.619274 |
Target: 5'- --gGCCaCCUGCGggUCCUGGCCGGCc-- -3' miRNA: 3'- ucgUGG-GGAUGU--GGGACCGGUCGuug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 16911 | 0.68 | 0.619274 |
Target: 5'- aGGCGCUgCUGCGCa-UGGCCuGCGAg -3' miRNA: 3'- -UCGUGGgGAUGUGggACCGGuCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 87690 | 0.68 | 0.619274 |
Target: 5'- cGUcgGCCCC---AUCCUGGCCcGCAGCg -3' miRNA: 3'- uCG--UGGGGaugUGGGACCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 3981 | 0.68 | 0.619274 |
Target: 5'- aGGuCGCCgCCga-GCCCUcGGCCAGCGc- -3' miRNA: 3'- -UC-GUGG-GGaugUGGGA-CCGGUCGUug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 71334 | 0.68 | 0.619274 |
Target: 5'- uGGgGCCCgCUGCACaCCgcggugacgcUGGCCAGCu-- -3' miRNA: 3'- -UCgUGGG-GAUGUG-GG----------ACCGGUCGuug -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 148942 | 0.68 | 0.619274 |
Target: 5'- -cCACCCCcGCucccgGCCCgcgGGCCcGCAGCu -3' miRNA: 3'- ucGUGGGGaUG-----UGGGa--CCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 83544 | 0.68 | 0.619274 |
Target: 5'- gGGCGCCCCcguCGUCgUGGCCcugcGCAGCg -3' miRNA: 3'- -UCGUGGGGau-GUGGgACCGGu---CGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 118041 | 0.68 | 0.619274 |
Target: 5'- -cCACCCCcGCucccgGCCCgcgGGCCcGCAGCu -3' miRNA: 3'- ucGUGGGGaUG-----UGGGa--CCGGuCGUUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 51370 | 0.68 | 0.619274 |
Target: 5'- cGCGCCCCagUACGCCCagcagugggagGcGCCGGCcGCc -3' miRNA: 3'- uCGUGGGG--AUGUGGGa----------C-CGGUCGuUG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 30903 | 0.68 | 0.619274 |
Target: 5'- cGCGCCCCgcggGCACCUc--CCGGCAGa -3' miRNA: 3'- uCGUGGGGa---UGUGGGaccGGUCGUUg -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 140577 | 0.68 | 0.619274 |
Target: 5'- gGGgGCCUCUGCgcgcugACCCUGGCCgccaugGGCGccgGCg -3' miRNA: 3'- -UCgUGGGGAUG------UGGGACCGG------UCGU---UG- -5' |
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21382 | 5' | -59.3 | NC_004812.1 | + | 112202 | 0.68 | 0.619274 |
Target: 5'- cGGCGCCCCgggcuauccACGCCCcuucGGCcCGGCcgGACg -3' miRNA: 3'- -UCGUGGGGa--------UGUGGGa---CCG-GUCG--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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