miRNA display CGI


Results 181 - 200 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 40277 0.68 0.629438
Target:  5'- aAGguCUCCUGCGCCgccGCCAGCAGg -3'
miRNA:   3'- -UCguGGGGAUGUGGgacCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 151191 0.68 0.629438
Target:  5'- cGCuguCCCCgccguCGUCCgcggGGCCGGCGACg -3'
miRNA:   3'- uCGu--GGGGau---GUGGGa---CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 103923 0.68 0.629438
Target:  5'- gGGCugCUggaCUACACCgaGGuCCAGCGccGCa -3'
miRNA:   3'- -UCGugGG---GAUGUGGgaCC-GGUCGU--UG- -5'
21382 5' -59.3 NC_004812.1 + 73010 0.68 0.629438
Target:  5'- cGCACCCacugGCGCCCgcuGCUggAGCGGCu -3'
miRNA:   3'- uCGUGGGga--UGUGGGac-CGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 25683 0.68 0.629438
Target:  5'- cGCuguCCCCgccguCGUCCgcggGGCCGGCGACg -3'
miRNA:   3'- uCGu--GGGGau---GUGGGa---CCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 111413 0.68 0.629438
Target:  5'- cGCGCUgCUGCGCUCccgGGCCugGGUGACg -3'
miRNA:   3'- uCGUGGgGAUGUGGGa--CCGG--UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 140577 0.68 0.619274
Target:  5'- gGGgGCCUCUGCgcgcugACCCUGGCCgccaugGGCGccgGCg -3'
miRNA:   3'- -UCgUGGGGAUG------UGGGACCGG------UCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 118041 0.68 0.619274
Target:  5'- -cCACCCCcGCucccgGCCCgcgGGCCcGCAGCu -3'
miRNA:   3'- ucGUGGGGaUG-----UGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 51370 0.68 0.619274
Target:  5'- cGCGCCCCagUACGCCCagcagugggagGcGCCGGCcGCc -3'
miRNA:   3'- uCGUGGGG--AUGUGGGa----------C-CGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 148942 0.68 0.619274
Target:  5'- -cCACCCCcGCucccgGCCCgcgGGCCcGCAGCu -3'
miRNA:   3'- ucGUGGGGaUG-----UGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 83544 0.68 0.619274
Target:  5'- gGGCGCCCCcguCGUCgUGGCCcugcGCAGCg -3'
miRNA:   3'- -UCGUGGGGau-GUGGgACCGGu---CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 57490 0.68 0.619274
Target:  5'- --gGCCaCCUGCGggUCCUGGCCGGCc-- -3'
miRNA:   3'- ucgUGG-GGAUGU--GGGACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 3981 0.68 0.619274
Target:  5'- aGGuCGCCgCCga-GCCCUcGGCCAGCGc- -3'
miRNA:   3'- -UC-GUGG-GGaugUGGGA-CCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 16911 0.68 0.619274
Target:  5'- aGGCGCUgCUGCGCa-UGGCCuGCGAg -3'
miRNA:   3'- -UCGUGGgGAUGUGggACCGGuCGUUg -5'
21382 5' -59.3 NC_004812.1 + 87690 0.68 0.619274
Target:  5'- cGUcgGCCCC---AUCCUGGCCcGCAGCg -3'
miRNA:   3'- uCG--UGGGGaugUGGGACCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 112202 0.68 0.619274
Target:  5'- cGGCGCCCCgggcuauccACGCCCcuucGGCcCGGCcgGACg -3'
miRNA:   3'- -UCGUGGGGa--------UGUGGGa---CCG-GUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 30903 0.68 0.619274
Target:  5'- cGCGCCCCgcggGCACCUc--CCGGCAGa -3'
miRNA:   3'- uCGUGGGGa---UGUGGGaccGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 71334 0.68 0.619274
Target:  5'- uGGgGCCCgCUGCACaCCgcggugacgcUGGCCAGCu-- -3'
miRNA:   3'- -UCgUGGG-GAUGUG-GG----------ACCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 107037 0.68 0.618258
Target:  5'- cAGCAgCCCC-AgGCCCugcucguacuggaUGGCCAGCGc- -3'
miRNA:   3'- -UCGU-GGGGaUgUGGG-------------ACCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 96114 0.68 0.618258
Target:  5'- -cUACCCCcgUccguucuucaaccGCGCCCUGGCCGGCc-- -3'
miRNA:   3'- ucGUGGGG--A-------------UGUGGGACCGGUCGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.