miRNA display CGI


Results 101 - 120 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 151986 0.67 0.700189
Target:  5'- cGCGCCCgUguggGCGCCCgagcugGGCgAcGCGGCg -3'
miRNA:   3'- uCGUGGGgA----UGUGGGa-----CCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 125254 0.67 0.700189
Target:  5'- aGGCGCgCCgGCgGCCCgGGCUcGCGGCg -3'
miRNA:   3'- -UCGUGgGGaUG-UGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 83821 0.67 0.700189
Target:  5'- gAGUugCCCgacgcgaggGCGCCC-GGCCgucuccggggggAGCGGCg -3'
miRNA:   3'- -UCGugGGGa--------UGUGGGaCCGG------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 156155 0.67 0.700189
Target:  5'- aGGCGCgCCgGCgGCCCgGGCUcGCGGCg -3'
miRNA:   3'- -UCGUGgGGaUG-UGGGaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 9449 0.67 0.700189
Target:  5'- uGCGCCUUcuggUGCugUCUGGCCcacgccGCGACg -3'
miRNA:   3'- uCGUGGGG----AUGugGGACCGGu-----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 26478 0.67 0.700189
Target:  5'- cGCGCCCgUguggGCGCCCgagcugGGCgAcGCGGCg -3'
miRNA:   3'- uCGUGGGgA----UGUGGGa-----CCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 25762 0.67 0.700189
Target:  5'- cGCGCCCCcGCcgACCCcGGgCGGCGc- -3'
miRNA:   3'- uCGUGGGGaUG--UGGGaCCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 38908 0.67 0.700189
Target:  5'- gGGCGCUCCcGCgACCCggggggcgcgGGCCGGCc-- -3'
miRNA:   3'- -UCGUGGGGaUG-UGGGa---------CCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 83871 0.67 0.700189
Target:  5'- gGGC-CCCCggacgUGCGCUUcgUGGgCAGCGACg -3'
miRNA:   3'- -UCGuGGGG-----AUGUGGG--ACCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 124202 0.67 0.700189
Target:  5'- cGCGCCCgCggcgGCgACCgaGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGG-Ga---UG-UGGgaCCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 139019 0.67 0.700189
Target:  5'- aAGUcCUCCgACGCCCa-GCCGGCGGCg -3'
miRNA:   3'- -UCGuGGGGaUGUGGGacCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 150416 0.67 0.700189
Target:  5'- cGgGCCgCCggGCGCCCcgGGCCuccGCGACc -3'
miRNA:   3'- uCgUGG-GGa-UGUGGGa-CCGGu--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 142478 0.67 0.700189
Target:  5'- gGGCGCCCUgACGC---GGCUGGCGGCg -3'
miRNA:   3'- -UCGUGGGGaUGUGggaCCGGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 151270 0.67 0.700189
Target:  5'- cGCGCCCCcGCcgACCCcGGgCGGCGc- -3'
miRNA:   3'- uCGUGGGGaUG--UGGGaCCgGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 18472 0.67 0.700189
Target:  5'- cGCGgCCCcGCGCCCgcggGGCCcagacacaGGCAGa -3'
miRNA:   3'- uCGUgGGGaUGUGGGa---CCGG--------UCGUUg -5'
21382 5' -59.3 NC_004812.1 + 16753 0.67 0.69919
Target:  5'- gGGCGCCCCggGgGCCgCgGGCCcgaagacgcguggGGCGGCc -3'
miRNA:   3'- -UCGUGGGGa-UgUGG-GaCCGG-------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 152722 0.67 0.690182
Target:  5'- cGCGCCC--GCGCCuCUGGCUGcGCGAg -3'
miRNA:   3'- uCGUGGGgaUGUGG-GACCGGU-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 125663 0.67 0.690182
Target:  5'- cGCGCCgCC-GCGCCCgcGGCCcGCcGCg -3'
miRNA:   3'- uCGUGG-GGaUGUGGGa-CCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 107933 0.67 0.690182
Target:  5'- gAGCGCCCCgaggAgGCC--GGCCAucgcGCGGCg -3'
miRNA:   3'- -UCGUGGGGa---UgUGGgaCCGGU----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 66611 0.67 0.690182
Target:  5'- gGGcCGCUCC-ACGCCCaGGCCGuCGGCa -3'
miRNA:   3'- -UC-GUGGGGaUGUGGGaCCGGUcGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.