miRNA display CGI


Results 121 - 140 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 156564 0.67 0.690182
Target:  5'- cGCGCCgCC-GCGCCCgcGGCCcGCcGCg -3'
miRNA:   3'- uCGUGG-GGaUGUGGGa-CCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 111517 0.67 0.690182
Target:  5'- -aCGCCCCc-CGCCCgccGGCCGGCu-- -3'
miRNA:   3'- ucGUGGGGauGUGGGa--CCGGUCGuug -5'
21382 5' -59.3 NC_004812.1 + 145173 0.67 0.690182
Target:  5'- cGGC-UCCCgGCACCCUcccGCCGGCggUa -3'
miRNA:   3'- -UCGuGGGGaUGUGGGAc--CGGUCGuuG- -5'
21382 5' -59.3 NC_004812.1 + 39251 0.67 0.690182
Target:  5'- aGGCGCCCgUuguccagguaGCGCUgcaUGGgCAGCAGCa -3'
miRNA:   3'- -UCGUGGGgA----------UGUGGg--ACCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 40881 0.67 0.690182
Target:  5'- cGGcCAUUCauaUACGCCC-GGCCGGCGAa -3'
miRNA:   3'- -UC-GUGGGg--AUGUGGGaCCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 55718 0.67 0.690182
Target:  5'- cGCGCCCC-GC-CUCgggGGCC-GCGGCg -3'
miRNA:   3'- uCGUGGGGaUGuGGGa--CCGGuCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 36005 0.67 0.690182
Target:  5'- aGGCGCUCCagGCugCggUGGCgGGCGGCg -3'
miRNA:   3'- -UCGUGGGGa-UGugGg-ACCGgUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 107933 0.67 0.690182
Target:  5'- gAGCGCCCCgaggAgGCC--GGCCAucgcGCGGCg -3'
miRNA:   3'- -UCGUGGGGa---UgUGGgaCCGGU----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 109087 0.67 0.690182
Target:  5'- cAGC-CCCCccCG-CCUGGCCGGCcACc -3'
miRNA:   3'- -UCGuGGGGauGUgGGACCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 125663 0.67 0.690182
Target:  5'- cGCGCCgCC-GCGCCCgcGGCCcGCcGCg -3'
miRNA:   3'- uCGUGG-GGaUGUGGGa-CCGGuCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 81875 0.67 0.690182
Target:  5'- aGGUACCCgagGCcgaagucccggGCCCaGGCCAGCAcccGCa -3'
miRNA:   3'- -UCGUGGGga-UG-----------UGGGaCCGGUCGU---UG- -5'
21382 5' -59.3 NC_004812.1 + 152722 0.67 0.690182
Target:  5'- cGCGCCC--GCGCCuCUGGCUGcGCGAg -3'
miRNA:   3'- uCGUGGGgaUGUGG-GACCGGU-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 27214 0.67 0.690182
Target:  5'- cGCGCCC--GCGCCuCUGGCUGcGCGAg -3'
miRNA:   3'- uCGUGGGgaUGUGG-GACCGGU-CGUUg -5'
21382 5' -59.3 NC_004812.1 + 34646 0.67 0.680127
Target:  5'- uGCACaCCCgggccaccgGCGCCagGGCCAGCGc- -3'
miRNA:   3'- uCGUG-GGGa--------UGUGGgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 137893 0.67 0.680127
Target:  5'- cGGCGCCCCaGCGCCgCgGaGCUAcuGCGGCu -3'
miRNA:   3'- -UCGUGGGGaUGUGG-GaC-CGGU--CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 58658 0.67 0.680127
Target:  5'- cGGCGCCCUggAC-CCCaccGGCCAGgCGAa -3'
miRNA:   3'- -UCGUGGGGa-UGuGGGa--CCGGUC-GUUg -5'
21382 5' -59.3 NC_004812.1 + 39361 0.67 0.680127
Target:  5'- cAGCACggCCUGCACgUugcgGGCCAGCuGCu -3'
miRNA:   3'- -UCGUGg-GGAUGUGgGa---CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 22652 0.67 0.680127
Target:  5'- gGGgGCUCCcGCguGCCCggGGCCGGCGGg -3'
miRNA:   3'- -UCgUGGGGaUG--UGGGa-CCGGUCGUUg -5'
21382 5' -59.3 NC_004812.1 + 20221 0.67 0.680127
Target:  5'- cAGCGcCCCCUGCGUCaugGGCCaggccuccgcgGGCAGCu -3'
miRNA:   3'- -UCGU-GGGGAUGUGGga-CCGG-----------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 13045 0.67 0.680127
Target:  5'- gGGCcgGCCCCgguCGCCC---CCAGCGACa -3'
miRNA:   3'- -UCG--UGGGGau-GUGGGaccGGUCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.